PERFORM Publications

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Title		Authors	PubMed ID
1	Using Models to (Re-)Design Synthetic Circuits.	McCallum G, Potvin-Trottier L	33405217 BIOLOGY
2	Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes.	Najeh S, Zandi K, Djerroud S, Kharma N, Perreault J	32712917 ENCS
3	Metabolomic and lipidomic analyses of chronologically aging yeast.	Richard VR, Bourque SD, Titorenko VI	25213255 BIOLOGY
4	A Cell-Free Content Mixing Assay for SNARE-Mediated Multivesicular Body-Vacuole Membrane Fusion.	Karim MA, Samyn DR, Brett CL	30317513 BIOLOGY
5	Visualization of SNARE-Mediated Organelle Membrane Hemifusion by Electron Microscopy.	Mattie S, Kazmirchuk T, Mui J, Vali H, Brett CL	30317518 BIOLOGY
6	Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics.	Gruninger RJ, Reid I, Forster RJ, Tsang A, McAllister TA	28417376 CSFG
7	Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry	Robert J Gruninger	28417377 CSFG
8	Introduction: Overview of Fungal Genomics.	de Vries RP, Grigoriev IV, Tsang A	29876804 CSFG
9	Fungal Genomic DNA Extraction Methods for Rapid Genotyping and Genome Sequencing.	Bellemare A, John T, Marqueteau S	29876805 CSFG
10	Mass Spectrometry-Based Proteomics	Marcos Rafael Di Falco	29876812 CSFG
11	Evolutionary Adaptation to Generate Mutants.	de Vries RP, Lubbers R, Patyshakuliyeva A, Wiebenga A, Benoit-Gelber I	29876815 BIOLOGY
12	Manual Gene Curation and Functional Annotation.	McDonnell E, Strasser K, Tsang A	29876819 CSFG
13	Evaluating Programs for Predicting Genes and Transcripts with RNA-Seq Support in Fungal Genomes.	Reid I	29876820 CSFG
14	Phylogenetic Analysis of Protein Family.	Song L, Wu S, Tsang A	29876824 CSFG

Title:	Introduction: Overview of Fungal Genomics.
Authors:	de Vries RP, Grigoriev IV, Tsang A
Link:	https://www.ncbi.nlm.nih.gov/pubmed/29876804?dopt=Abstract
DOI:	10.1007/978-1-4939-7804-5_1
Publication:	Methods in molecular biology (Clifton, N.J.)
Keywords:	Fungi; Genomes; Metabolomics; Proteomics; Transcriptomics;
PMID:	29876804	Category:	Methods Mol Biol	Date Added:	2019-06-07
Dept Affiliation:	CSFG 1 Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands. r.devries@westerdijkinstitute.nl. 2 United States Department of Energy Joint Genome Institute, Walnut Creek, CA, USA. 3 Centre for Structural and Functional Genomics, Concordia University, Montreal, QC, Canada.

Description:

Introduction: Overview of Fungal Genomics.

Methods Mol Biol. 2018;1775:1-7

Authors: de Vries RP, Grigoriev IV, Tsang A

Abstract

Genome sequences and postgenomic tools have had a major impact on fungal research. When the first fungal genome sequences became available it became clear how much more complex fungal biology was than had been previously assumed. Since then an increasing number of genomes have become available enabling detailed comparative studies, especially when combined with postgenomic tools such as transcriptomics and proteomics. This chapter provides an overview and current state of fungal genomics.

PMID: 29876804 [PubMed - indexed for MEDLINE]

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