Keyword search (4,163 papers available)

"kinetics" Keyword-tagged Publications:

Title Authors PubMed ID
1 The enterobactin biosynthetic intermediate 2,3-dihydroxybenzoic acid is a competitive inhibitor of the Escherichia coli isochorismatase EntB Bin X; Pawelek PD; 40400396
CHEMBIOCHEM
2 In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin Fatoki TH; Balogun TC; Ojewuyi AE; Omole AC; Olukayode OV; Adewumi AP; Umesi AJ; Ijeoma NP; Apooyin AE; Chinedu CP; Idowu IE; Isah MJ; 39439008
CHEMBIOCHEM
3 Investigating the kinetics of marine and terrestrial organic carbon incorporation and degradation in coastal bulk sediment and water settings through isotopic lenses Mirzaei Y; Gélinas Y; 39117203
CHEMBIOCHEM
4 Bulk Free Radical Terpolymerization of Butyl Acrylate, 2-Methylene-1,3-Dioxepane and Vinyl Acetate: Terpolymer Reactivity Ratio Estimation Movafagh M; Meek KM; Scott AJ; Penlidis A; Dubé MA; 38794524
ENCS
5 Functional analysis of the protocatechuate branch of the β-ketoadipate pathway in Aspergillus niger Sgro M; Chow N; Olyaei F; Arentshorst M; Geoffrion N; Ram AFJ; Powlowski J; Tsang A; 37399977
BIOLOGY
6 Genetic Screening of Candida albicans Inactivation Mutants Identifies New Genes Involved in Macrophage-Fungal Cell Interactions Godoy P; Darlington PJ; Whiteway M; 35450285
PERFORM
7 Bioprinting of Adult Dorsal Root Ganglion (DRG) Neurons Using Laser-Induced Side Transfer (LIST) Roversi K; Ebrahimi Orimi H; Falchetti M; Lummertz da Rocha E; Talbot S; Boutopoulos C; 34442487
ENCS
8 Effect of dissolved oxygen on simultaneous removal of ammonia, nitrate and phosphorus via biological aerated filter with sulfur and pyrite as composite fillers. Li Y, Guo J, Li H, Song Y, Chen Z, Lu C, Han Y, Hou Y 31704601
ENCS
9 Umbelliferone derivatives exert neuroprotective effects by inhibiting monoamine oxidase A, self-amyloidβ aggregation, and lipid peroxidation. Seong SH, Ali MY, Jung HA, Choi JS 31557622
CHEMBIOCHEM
10 Electro-demulsification of water-in-oil suspensions enhanced with implementing various additives. Taslimi Taleghani S, Fellah Jahromi A, Elektorowicz M 31173953
ENCS
11 The effect of different divalent cations on the kinetics and fidelity of Bacillus stearothermophilus DNA polymerase. Vashishtha AK, Konigsberg WH 29888334
CSFG

 

Title:In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin
Authors:Fatoki THBalogun TCOjewuyi AEOmole ACOlukayode OVAdewumi APUmesi AJIjeoma NPApooyin AEChinedu CPIdowu IEIsah MJ
Link:https://pubmed.ncbi.nlm.nih.gov/39439008/
DOI:10.1186/s40360-024-00804-z
Publication:BMC pharmacology & toxicology
Keywords:AntibioticMolecular dynamics simulationMolecular targetOritavancinPBPK modelingPharmacokinetics
PMID:39439008 Category: Date Added:2024-10-23
Dept Affiliation: CHEMBIOCHEM
1 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria. toluwase.fatoki@fuoye.edu.ng.
2 Department of Chemistry and Biochemistry, Concordia University, Montreal, QC, H4B 1R6, Canada. toluwase.fatoki@fuoye.edu.ng.
3 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria.

Description:

Introduction: Oritavancin is a semi-synthetic lipoglycopeptide antibiotic primarily used to treat serious infections caused by Gram-positive bacteria. The aim of this study was to elucidate possible molecular targets of oritavancin in human and microbes in relevance to its mechanism of action and model its pharmacokinetics for optimal dose selection in clinical practice.

Methods: Computational methods were used in this study which include target prediction, molecular docking, molecular dynamics simulation, pharmacokinetics prediction, and physiological-based pharmacokinetics (PBPK) modeling.

Results: Oritavancin was moderately soluble in water and did not permeate the blood-brain barrier. Seven molecular targets were identified in humans. Molecular docking results showed highest binding affinity of oritavancin with PI3-kinase p110-gamma subunit (-10.34 kcal/mol), followed by Acyl-CoA desaturase (-10.07 kcal/mol) and Cytochrome P450 2C19 (-8.384 kcal/mol). Oritavancin PBPK modelling in adult human showed that infusion has lower peak concentrations (Cmax) compared to bolus administration, with 1200 mg dose yielded Cmax of 16.559 mg/L, 800 mg dose yielded Cmax of 11.258 mg/L, and 200 mg over 3 days dose yielded Cmax of 7.526 mg/L. Notably, infusion gave extended half-life (t1/2) for all doses and slightly higher clearance rates compared to bolus, particularly for the 1200 mg and 800 mg doses. The results corroborated existing clinical pharmacokinetic data, and confirmed the model's accuracy and predictive capability.

Conclusion: This comprehensive computational study has provided invaluable insights into the pharmacological profile of Oritavancin, aiding its further development and optimization for clinical use.





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