PERFORM Publications

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Title		Authors	PubMed ID
1	Expansion of Auxiliary Activity Family 5 sequence space via biochemical characterization of six new copper radical oxidases	Fong JK; Mathieu Y; Vo MT; Bellemare A; Tsang A; Brumer H;	38953370 CSFG
2	Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics	Gruninger RJ; Tsang A; McAllister TA;	37149538 CSFG
3	Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls	Derba-Maceluch M; Mitra M; Hedenström M; Liu X; Gandla ML; Barbut FR; Abreu IN; Donev EN; Urbancsok J; Moritz T; Jönsson LJ; Tsang A; Powlowski J; Master ER; Mellerowicz EJ;	36600379 CSFG
4	On the Origin of Sugar Handedness: Facts, Hypotheses and Missing Links-A Review	Martínez RF; Cuccia LA; Viedma C; Cintas P;	35796896 CHEMBIOCHEM
5	Editorial: The Effect of Carbohydrate Restriction on Cancer and Metabolic Syndrome	Elisia I; Santosa S; Popovich DG; Krystal G;	35237644 HKAP
6	Screening of novel fungal Carbohydrate Esterase family 1 enzymes identifies three novel dual feruloyl/acetyl xylan esterases	Dilokpimol A; Verkerk B; Li X; Bellemare A; Lavallee M; Frommhagen M; Nørmølle Underlin E; Kabel MA; Powlowski J; Tsang A; de Vries RP;	35187647 CSFG
7	Resources and Methods for Engineering "Designer" Glycan-Binding Proteins.	Warkentin R, Kwan DH	33450899 CHEMBIOCHEM
8	Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila.	Kolbusz MA, Di Falco M, Ishmael N, Marqueteau S, Moisan MC, Baptista CDS, Powlowski J, Tsang A	24881579 BIOLOGY
9	Evaluation of secretome of highly efficient lignocellulolytic Penicillium sp. Dal 5 isolated from rhizosphere of conifers.	Rai R, Kaur B, Singh S, Di Falco M, Tsang A, Chadha BS	27341464 CSFG
10	Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics.	Gruninger RJ, Reid I, Forster RJ, Tsang A, McAllister TA	28417376 CSFG
11	Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates.	Jones DR, Uddin MS, Gruninger RJ, Pham TTM, Thomas D, Boraston AB, Briggs J, Pluvinage B, McAllister TA, Forster RJ, Tsang A, Selinger LB, Abbott DW	28588026 CSFG
12	Identification of novel enzymes to enhance the ruminal digestion of barley straw	Badhan A; Ribeiro GO; Jones DR; Wang Y; Abbott DW; Di Falco M; Tsang A; McAllister TA;	29621684 CSFG
13	Saccharification efficiencies of multi-enzyme complexes produced by aerobic fungi.	Badhan A, Huang J, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister T	29803771 CSFG
14	Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates.	Gruninger RJ, Nguyen TTM, Reid ID, Yanke JL, Wang P, Abbott DW, Tsang A, McAllister T	30061875 CSFG

Title:	Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila.
Authors:	Kolbusz MA, Di Falco M, Ishmael N, Marqueteau S, Moisan MC, Baptista CDS, Powlowski J, Tsang A
Link:	https://www.ncbi.nlm.nih.gov/pubmed/24881579?dopt=Abstract
DOI:	10.1016/j.fgb.2014.05.006
Publication:	Fungal genetics and biology : FG & B
Keywords:	Biomass degradation; Carbohydrate-active enzymes; Mass spectrometry; Myceliophthora thermophila; RNA-Seq;
PMID:	24881579	Category:	Fungal Genet Biol	Date Added:	2019-06-07
Dept Affiliation:	BIOLOGY 1 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada; Department of Biology, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada; Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: magdalena.kolbusz@concordia.ca. 2 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: marcos.difalco@concordia.ca. 3 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: nadeeza.ishmael@concordia.ca. 4 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: sandrine.marqueteau@concordia.ca. 5 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: marie-claude.moisan@concordia.ca. 6 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: Cassio.Baptista@nrc-cnrc.gc.ca. 7 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada; Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: justin.powlowski@concordia.ca. 8 Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada; Department of Biology, Concordia University, 7141 Sherbrooke Street West, Montréal, Québec H4B 1R6, Canada. Electronic address: adrian.tsang@concordia.ca.

Description:

Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila.

Fungal Genet Biol. 2014 Nov;72:10-20

Authors: Kolbusz MA, Di Falco M, Ishmael N, Marqueteau S, Moisan MC, Baptista CDS, Powlowski J, Tsang A

Abstract

Myceliophthora thermophila is a thermophilic fungus whose genome encodes a wide range of carbohydrate-active enzymes (CAZymes) involved in plant biomass degradation. Such enzymes have potential applications in turning different kinds of lignocellulosic feedstock into sugar precursors for biofuels and chemicals. The present study examined and compared the transcriptomes and exoproteomes of M. thermophila during cultivation on different types of complex biomass to gain insight into how its secreted enzymatic machinery varies with different sources of lignocellulose. In the transcriptome analysis three monocot (barley, oat, triticale) and three dicot (alfalfa, canola, flax) plants were used whereas in the proteome analysis additional substrates, i.e. wood and corn stover pulps, were included. A core set of 59 genes encoding CAZymes was up-regulated in response to both monocot and dicot straws, including nine polysaccharide monooxygenases and GH10, but not GH11, xylanases. Genes encoding additional xylanolytic enzymes were up-regulated during growth on monocot straws, while genes encoding additional pectinolytic enzymes were up-regulated in response to dicot biomass. Exoproteome analysis was generally consistent with the conclusions drawn from transcriptome analysis, but additional CAZymes that accumulated to high levels were identified. Despite the wide variety of biomass sources tested some CAZy family members were not expressed under any condition. The results of this study provide a comprehensive view from both transcriptome and exoproteome levels, of how M. thermophila responds to a wide range of biomass sources using its genomic resources.

PMID: 24881579 [PubMed - indexed for MEDLINE]

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