Keyword search (4,163 papers available)

"Biomass" Keyword-tagged Publications:

Title Authors PubMed ID
1 eDNA Provides Accurate Population Abundance Estimates With Bioenergetics and Particle Mass-Balance Modelling Beaulieu J; Yates MC; Fraser DJ; Cristescu ME; Derry AM; 41913704
BIOLOGY
2 Fortifying the Rasamsonia emersonii secretome with recombinant cellobiohydrolase (GH7) for efficient biomass saccharification Raheja Y; Singh V; Gaur VK; Sharma G; Tsang A; Chadha BS; 40622460
GENOMICS
3 Production and characterization of magnetic Biochar derived from pyrolysis of waste areca nut husk for removal of methylene blue dye from wastewater Chistie SM; Naik SU; Rajendra P; Apeksha None; Mishra RK; Albasher G; Chinnam S; Jeppu GP; Arif Z; Hameed J; 40603323
ENCS
4 Evaluating Sustainable Practices for Managing Residue Derived from Wheat Straw Shanmugam H; Raghavan V; Rajagopal R; Goyette B; Lyu L; Zhou S; An C; 38927790
ENCS
5 Diverse Applications of Biomass-Derived 5-Hydroxymethylfurfural and Derivatives as Renewable Starting Materials Chacón-Huete F; Messina C; Cigana B; Forgione P; 35652539
CHEMBIOCHEM
6 Screening of novel fungal Carbohydrate Esterase family 1 enzymes identifies three novel dual feruloyl/acetyl xylan esterases Dilokpimol A; Verkerk B; Li X; Bellemare A; Lavallee M; Frommhagen M; Nørmølle Underlin E; Kabel MA; Powlowski J; Tsang A; de Vries RP; 35187647
CSFG
7 Species compositions mediate biomass conservation: the case of lake fish communities Arranz I; Fournier B; Lester NP; Shuter BJ; Peres-Neto PR; 34905222
BIOLOGY
8 Use of biomass-derived adsorbents for the removal of petroleum pollutants from water: a mini-review Vahabisani A; An C; 34804763
ENCS
9 The relationship between eDNA particle concentration and organism abundance in nature is strengthened by allometric scaling. Yates MC, Glaser D, Post J, Cristescu ME, Fraser DJ, Derry AM 32638451
CONCORDIA
10 Penicillium subrubescens adapts its enzyme production to the composition of plant biomass. Dilokpimol A, Peng M, Di Falco M, Chin A Woeng T, Hegi RMW, Granchi Z, Tsang A, Hildén KS, Mäkelä MR, de Vries RP 32408196
CSFG
11 Evidence for ligninolytic activity of the ascomycete fungus Podospora anserina. van Erven G, Kleijn AF, Patyshakuliyeva A, Di Falco M, Tsang A, de Vries RP, van Berkel WJH, Kabel MA 32322305
CSFG
12 Enzymes of early-diverging, zoosporic fungi. Lange L, Barrett K, Pilgaard B, Gleason F, Tsang A 31309267
CSFG
13 Pilot-scale application of a single-stage hybrid airlift BioCAST bioreactor for treatment of ammonium from nitrite-limited wastewater by a partial nitrification/anammox process. Saborimanesh N, Walsh D, Yerushalmi L, Arriagada EC, Mulligan CN 31267396
BIOLOGY
14 Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila. Kolbusz MA, Di Falco M, Ishmael N, Marqueteau S, Moisan MC, Baptista CDS, Powlowski J, Tsang A 24881579
BIOLOGY
15 Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. Benoit I, Culleton H, Zhou M, DiFalco M, Aguilar-Osorio G, Battaglia E, Bouzid O, Brouwer CPJM, El-Bushari HBO, Coutinho PM, Gruben BS, Hildén KS, Houbraken J, Barboza LAJ, Levasseur A, Majoor E, Mäkelä MR, Narang HM, Trejo-Aguilar B, van den Brink J, vanKuyk PA, Wiebenga A, McKie V, McCleary B, Tsang A, Henrissat B, de Vries RP 26236396
CSFG
16 Expression-based clustering of CAZyme-encoding genes of Aspergillus niger. Gruben BS, Mäkelä MR, Kowalczyk JE, Zhou M, Benoit-Gelber I, De Vries RP 29169319
CSFG
17 Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli Mäkelä MR; DiFalco M; McDonnell E; Nguyen TTM; Wiebenga A; Hildén K; Peng M; Grigoriev IV; Tsang A; de Vries RP; 30487660
CSFG
18 The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum. Coconi Linares N, Di Falco M, Benoit-Gelber I, Gruben BS, Peng M, Tsang A, Mäkelä MR, de Vries RP 30797054
CSFG

 

Title:Enzymes of early-diverging, zoosporic fungi.
Authors:Lange LBarrett KPilgaard BGleason FTsang A
Link:https://www.ncbi.nlm.nih.gov/pubmed/31309267?dopt=Abstract
DOI:10.1007/s00253-019-09983-w
Publication:Applied microbiology and biotechnology
Keywords:Biomass-degrading enzymesBiotech potentialEarly-diverging fungiFunctional genomicsSecretome enzyme compositionSecretome evolutionZoosporic aerobic and anaerobic fungi
PMID:31309267 Category:Appl Microbiol Biotechnol Date Added:2019-08-07
Dept Affiliation: CSFG
1 Bioeconomy, Research & Advisory, Karensgade 5, Valby, DK-2500, Copenhagen, Denmark. lene.lange2@gmail.com.
2 Protein Chemistry and Enzyme Technology, Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, DK-2800, Kgs. Lyngby, Denmark.
3 School of Life and Environmental Sciences, University of Sydney, Sydney, 2006, Australia.
4 Centre for Structural and Functional Genomics, Concordia University, Montreal, QC, H4B1R6, Canada.

Description:

Enzymes of early-diverging, zoosporic fungi.

Appl Microbiol Biotechnol. 2019 Jul 15;:

Authors: Lange L, Barrett K, Pilgaard B, Gleason F, Tsang A

Abstract

The secretome, the complement of extracellular proteins, is a reflection of the interaction of an organism with its host or substrate, thus a determining factor for the organism's fitness and competitiveness. Hence, the secretome impacts speciation and organismal evolution. The zoosporic Chytridiomycota, Blastocladiomycota, Neocallimastigomycota, and Cryptomycota represent the earliest diverging lineages of the Fungal Kingdom. The review describes the enzyme compositions of these zoosporic fungi, underscoring the enzymes involved in biomass degradation. The review connects the lifestyle and substrate affinities of the zoosporic fungi to the secretome composition by examining both classical phenotypic investigations and molecular/genomic-based studies. The carbohydrate-active enzyme profiles of 19 genome-sequenced species are summarized. Emphasis is given to recent advances in understanding the functional role of rumen fungi, the basis for the devastating chytridiomycosis, and the structure of fungal cellulosome. The approach taken by the review enables comparison of the secretome enzyme composition of anaerobic versus aerobic early-diverging fungi and comparison of enzyme portfolio of specialized parasites, pathogens, and saprotrophs. Early-diverging fungi digest most major types of biopolymers: cellulose, hemicellulose, pectin, chitin, and keratin. It is thus to be expected that early-diverging fungi in its entirety represents a rich and diverse pool of secreted, metabolic enzymes. The review presents the methods used for enzyme discovery, the diversity of enzymes found, the status and outlook for recombinant production, and the potential for applications. Comparative studies on the composition of secretome enzymes of early-diverging fungi would contribute to unraveling the basal lineages of fungi.

PMID: 31309267 [PubMed - as supplied by publisher]





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