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PubMed Publications| Keyword search (4,163 papers available) |  |
"Zhang Y" Authored Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Risks of per- and polyfluoroalkyl substance exposure through marine fish consumption | Qiu W; Yang G; Cao L; Niu S; Li Y; Fang D; Dong Z; Magnuson JT; Schlenk D; Leung KMY; Zheng Y; Zeng Z; Feng L; Zhang X; Zhang Y; Fan W; Huang T; Ma J; Wu M; Tao S; Zheng C; | 41411415 CHEMBIOCHEM |
| 2 | A Deep Learning-Based Ensemble System for Brent and WTI Crude Oil Price Analysis and Prediction | Zhang Y; Lahmiri S; | 41294965 JMSB |
| 3 | Distributed adaptive fault-tolerant cooperative control for fixed-wing UAVs with actuator faults and input constraints | Fu M; Yu Z; Zhang Y; | 40946062 ENCS |
| 4 | Reduced Eye Blinking During Sentence Listening Reflects Increased Cognitive Load in Challenging Auditory Conditions | Coupal P; Zhang Y; Deroche M; | 40910460 PSYCHOLOGY |
| 5 | Oxy-reductive C-N bond formation via pulsed electrolysis | Zhang Y; Al-Mahayni H; Aguiar PM; Chartrand D; McKee M; Shamekhi M; Seifitokaldani A; Kornienko N; | 40883279 PHYSICS |
| 6 | Pupillometry reveals effects of pitch manipulation within and across words on listening effort and short-term memory | Zhang Y; Sares A; Delage A; Lehmann A; Deroche M; | 39349635 CONCORDIA |
| 7 | Differences Between French and English in the Use of Suprasegmental Cues for the Short-Term Recall of Word Lists | Lew EC; Sares A; Gilbert AC; Zhang Y; Lehmann A; Deroche M; | 39320319 PSYCHOLOGY |
| 8 | Connectivity preservation control for multiple unmanned aerial vehicles in the presence of bounded actuation | Xue X; Yuan B; Yi Y; Zhang Y; Yue X; Mu L; | 38964998 ENCS |
| 9 | A fault isolation strategy for industrial processes using outlier-degree-based variable contributions | Mu L; Sun W; Zhang Y; Feng N; Xue X; Li Q; | 38862336 ENCS |
| 10 | Advanced Dielectric Resonator Antenna Technology for 5G and 6G Applications | Zhang Y; Ogurtsov S; Vasilev V; Kishk AA; Caratelli D; | 38474958 ENCS |
| 11 | Spatial and Temporal Availability of Cloud-free Optical Observations in the Tropics to Monitor Deforestation | Flores-Anderson AI; Cardille J; Azad K; Cherrington E; Zhang Y; Wilson S; | 37607919 ENCS |
| 12 | Grouping by Time and Pitch Facilitates Free but Not Cued Recall for Word Lists in Normally-Hearing Listeners | Sares AG; Gilbert AC; Zhang Y; Iordanov M; Lehmann A; Deroche MLD; | 37338981 PSYCHOLOGY |
| 13 | Modeling and tracking control of dielectric elastomer actuators based on fractional calculus | Wu J; Xu Z; Zhang Y; Su CY; Wang Y; | 36792481 ENCS |
| 14 | The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum | Li J; Chroumpi T; Garrigues S; Kun RS; Meng J; Salazar-Cerezo S; Aguilar-Pontes MV; Zhang Y; Tejomurthula S; Lipzen A; Ng V; Clendinen CS; Tolic N; Grigoriev IV; Tsang A; Mäkelä MR; Snel B; Peng M; de Vries RP; | 36547648 BIOLOGY |
| 15 | Luminance effects on pupil dilation in speech-in-noise recognition | Zhang Y; Malaval F; Lehmann A; Deroche MLD; | 36459511 PSYCHOLOGY |
| 16 | Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations | Chen Q; Allot A; Leaman R; Islamaj R; Du J; Fang L; Wang K; Xu S; Zhang Y; Bagherzadeh P; Bergler S; Bhatnagar A; Bhavsar N; Chang YC; Lin SJ; Tang W; Zhang H; Tavchioski I; Pollak S; Tian S; Zhang J; Otmakhova Y; Yepes AJ; Dong H; Wu H; Dufour R; Labrak Y; Chatterjee N; Tandon K; Laleye FAA; Rakotoson L; Chersoni E; Gu J; Friedrich A; Pujari SC; Chizhikova M; Sivadasan N; Vg S; Lu Z; | 36043400 ENCS |
| 17 | Transcriptional Profiling of the Candida albicans Response to the DNA Damage Agent Methyl Methanesulfonate | Feng Y; Zhang Y; Li J; Omran RP; Whiteway M; Feng J; | 35886903 BIOLOGY |
| 18 | Multifaceted synergistic electron transfer mechanism for enhancing denitrification by clay minerals | Zhang Y; Lu C; Chen Z; Song Y; Li H; Han Y; Hou Y; Guo J; | 34915014 ENCS |
| 19 | The effect of step-feeding distribution ratio on high concentration perchlorate removal performance in ABR system with heterotrophic combined sulfur autotrophic process. | Li H, Li K, Guo J, Chen Z, Han Y, Song Y, Lu C, Hou Y, Zhang D, Zhang Y | 33485237 ENCS |
| 20 | Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. | Manjunath M; Yan J; Youn Y; Drucker KL; Kollmeyer TM; McKinney AM; Zazubovich V; Zhang Y; Costello JF; Eckel-Passow J; Selvin PR; Jenkins RB; Song JS; | 33130899 PHYSICS |
| 21 | Distributed adaptive fault-tolerant close formation flight control of multiple trailing fixed-wing UAVs. | Yu Z, Zhang Y, Jiang B, Yu X, Fu J, Jin Y, Chai T | 32680604 ENCS |
| 22 | Assessment of regional greenhouse gas emission from beef cattle production: A case study of Saskatchewan in Canada. | Chen Z, An C, Fang H, Zhang Y, Zhou Z, Zhou Y, Zhao S | 32217321 ENCS |
| 23 | Deep model integrated with data correlation analysis for multiple intermittent faults diagnosis. | Yang J, Xie G, Yang Y, Zhang Y, Liu W | 31174854 ENCS |
| 24 | Probability of major depression diagnostic classification using semi-structured versus fully structured diagnostic interviews | Levis B; Benedetti A; Riehm KE; Saadat N; Levis AW; Azar M; Rice DB; Chiovitti MJ; Sanchez TA; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; McMillan D; Patten SB; Shrier I; Steele RJ; Ziegelstein RC; Akena DH; Arroll B; Ayalon L; Baradaran HR; Baron M; Beraldi A; Bombardier CH; Butterworth P; Carter G; Chagas MH; Chan JCN; Cholera R; Chowdhary N; Clover K; Conwell Y; de Man-van Ginkel JM; Delgadillo J; Fann JR; Fischer FH; Fischler B; Fung D; Gelaye B; Goodyear-Smith F; Greeno CG; Hall BJ; Hambridge J; Harrison PA; Hegerl U; Hides L; Hobfoll SE; Hudson M; Hyphantis T; Inagaki M; Ismail K; Jetté N; Khamseh ME; Kiely KM; Lamers F; Liu SI; Lotrakul M; Loureiro SR; Löwe B; Marsh L; McGuire A; Mohd Sidik S; Munhoz TN; Muramatsu K; Osório FL; Patel V; Pence BW; Persoons P; Picardi A; Rooney AG; Santos IS; Shaaban J; Sidebottom A; Simning A; Stafford L; Sung S; Tan PLL; Turner A; van der Feltz-Cornelis CM; van Weert HC; Vöhringer PA; White J; Whooley MA; Winkley K; Yamada M; Zhang Y; Thombs BD; | 29717691 LIBRARY |
| 25 | Antagonistic interactions between two MAP kinase cascades in plant development and immune signaling. | Sun T, Nitta Y, Zhang Q, Wu D, Tian H, Lee JS, Zhang Y | 29789386 BIOLOGY |
| 26 | Biogenic membranes of the chloroplast in Chlamydomonas reinhardtii. | Schottkowski M, Peters M, Zhan Y, Rifai O, Zhang Y, Zerges W | 23129655 CSFG |
| 27 | A Lithium-Sulfur Battery using a 2D Current Collector Architecture with a Large-Sized Sulfur Host Operated under High Areal Loading and Low E/S Ratio. | Li M, Zhang Y, Bai Z, Liu WW, Liu T, Gim J, Jiang G, Yuan Y, Luo D, Feng K, Yassar RS, Wang X, Chen Z, Lu J | 30368935 ENCS |
| 28 | Effects of pool size and spacing on burning rate and flame height of two square heptane pool fires. | Wan H, Gao Z, Ji J, Zhang Y, Li K, Wang L | 30776594 ENCS |
| 29 | Simulation of electromechanical coupling coefficient by modified modal frequency spectrum method including the electrode effect | Zhang Y, Wang Z, Cheeke JD | 10829640 PHYSICS |
| Title: | The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum | ||||
| Authors: | Li J, Chroumpi T, Garrigues S, Kun RS, Meng J, Salazar-Cerezo S, Aguilar-Pontes MV, Zhang Y, Tejomurthula S, Lipzen A, Ng V, Clendinen CS, Tolic N, Grigoriev IV, Tsang A, Mäkelä MR, Snel B, Peng M, de Vries RP | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/36547648/ | ||||
| DOI: | 10.3390/jof8121315 | ||||
| Publication: | Journal of fungi (Basel, Switzerland) | ||||
| Keywords: | metabolism network; orthology-based approach; sugar catabolism; transcriptome analysis; | ||||
| PMID: | 36547648 | Category: | Date Added: | 2022-12-22 | |
| Dept Affiliation: |
BIOLOGY
1 Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. 2 Department of Biology, Concordia University, 7141 Sherbrooke Street West, Montreal, QC H4B 1R6, Canada. 3 USA Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA. 4 Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA. 5 Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94598, USA. 6 Department of Microbiology, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland. 7 Theoretical Biology and Bioinformatics, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. |
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Description: |
Fungi play a critical role in the global carbon cycle by degrading plant polysaccharides to small sugars and metabolizing them as carbon and energy sources. We mapped the well-established sugar metabolic network of Aspergillus niger to five taxonomically distant species (Aspergillus nidulans, Penicillium subrubescens, Trichoderma reesei, Phanerochaete chrysosporium and Dichomitus squalens) using an orthology-based approach. The diversity of sugar metabolism correlates well with the taxonomic distance of the fungi. The pathways are highly conserved between the three studied Eurotiomycetes (A. niger, A. nidulans, P. subrubescens). A higher level of diversity was observed between the T. reesei and A. niger, and even more so for the two Basidiomycetes. These results were confirmed by integrative analysis of transcriptome, proteome and metabolome, as well as growth profiles of the fungi growing on the corresponding sugars. In conclusion, the establishment of sugar pathway models in different fungi revealed the diversity of fungal sugar conversion and provided a valuable resource for the community, which would facilitate rational metabolic engineering of these fungi as microbial cell factories. |
