Keyword search (4,163 papers available)

"Zhang Y" Authored Publications:

Title Authors PubMed ID
1 Risks of per- and polyfluoroalkyl substance exposure through marine fish consumption Qiu W; Yang G; Cao L; Niu S; Li Y; Fang D; Dong Z; Magnuson JT; Schlenk D; Leung KMY; Zheng Y; Zeng Z; Feng L; Zhang X; Zhang Y; Fan W; Huang T; Ma J; Wu M; Tao S; Zheng C; 41411415
CHEMBIOCHEM
2 A Deep Learning-Based Ensemble System for Brent and WTI Crude Oil Price Analysis and Prediction Zhang Y; Lahmiri S; 41294965
JMSB
3 Distributed adaptive fault-tolerant cooperative control for fixed-wing UAVs with actuator faults and input constraints Fu M; Yu Z; Zhang Y; 40946062
ENCS
4 Reduced Eye Blinking During Sentence Listening Reflects Increased Cognitive Load in Challenging Auditory Conditions Coupal P; Zhang Y; Deroche M; 40910460
PSYCHOLOGY
5 Oxy-reductive C-N bond formation via pulsed electrolysis Zhang Y; Al-Mahayni H; Aguiar PM; Chartrand D; McKee M; Shamekhi M; Seifitokaldani A; Kornienko N; 40883279
PHYSICS
6 Pupillometry reveals effects of pitch manipulation within and across words on listening effort and short-term memory Zhang Y; Sares A; Delage A; Lehmann A; Deroche M; 39349635
CONCORDIA
7 Differences Between French and English in the Use of Suprasegmental Cues for the Short-Term Recall of Word Lists Lew EC; Sares A; Gilbert AC; Zhang Y; Lehmann A; Deroche M; 39320319
PSYCHOLOGY
8 Connectivity preservation control for multiple unmanned aerial vehicles in the presence of bounded actuation Xue X; Yuan B; Yi Y; Zhang Y; Yue X; Mu L; 38964998
ENCS
9 A fault isolation strategy for industrial processes using outlier-degree-based variable contributions Mu L; Sun W; Zhang Y; Feng N; Xue X; Li Q; 38862336
ENCS
10 Advanced Dielectric Resonator Antenna Technology for 5G and 6G Applications Zhang Y; Ogurtsov S; Vasilev V; Kishk AA; Caratelli D; 38474958
ENCS
11 Spatial and Temporal Availability of Cloud-free Optical Observations in the Tropics to Monitor Deforestation Flores-Anderson AI; Cardille J; Azad K; Cherrington E; Zhang Y; Wilson S; 37607919
ENCS
12 Grouping by Time and Pitch Facilitates Free but Not Cued Recall for Word Lists in Normally-Hearing Listeners Sares AG; Gilbert AC; Zhang Y; Iordanov M; Lehmann A; Deroche MLD; 37338981
PSYCHOLOGY
13 Modeling and tracking control of dielectric elastomer actuators based on fractional calculus Wu J; Xu Z; Zhang Y; Su CY; Wang Y; 36792481
ENCS
14 The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum Li J; Chroumpi T; Garrigues S; Kun RS; Meng J; Salazar-Cerezo S; Aguilar-Pontes MV; Zhang Y; Tejomurthula S; Lipzen A; Ng V; Clendinen CS; Tolic N; Grigoriev IV; Tsang A; Mäkelä MR; Snel B; Peng M; de Vries RP; 36547648
BIOLOGY
15 Luminance effects on pupil dilation in speech-in-noise recognition Zhang Y; Malaval F; Lehmann A; Deroche MLD; 36459511
PSYCHOLOGY
16 Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations Chen Q; Allot A; Leaman R; Islamaj R; Du J; Fang L; Wang K; Xu S; Zhang Y; Bagherzadeh P; Bergler S; Bhatnagar A; Bhavsar N; Chang YC; Lin SJ; Tang W; Zhang H; Tavchioski I; Pollak S; Tian S; Zhang J; Otmakhova Y; Yepes AJ; Dong H; Wu H; Dufour R; Labrak Y; Chatterjee N; Tandon K; Laleye FAA; Rakotoson L; Chersoni E; Gu J; Friedrich A; Pujari SC; Chizhikova M; Sivadasan N; Vg S; Lu Z; 36043400
ENCS
17 Transcriptional Profiling of the Candida albicans Response to the DNA Damage Agent Methyl Methanesulfonate Feng Y; Zhang Y; Li J; Omran RP; Whiteway M; Feng J; 35886903
BIOLOGY
18 Multifaceted synergistic electron transfer mechanism for enhancing denitrification by clay minerals Zhang Y; Lu C; Chen Z; Song Y; Li H; Han Y; Hou Y; Guo J; 34915014
ENCS
19 The effect of step-feeding distribution ratio on high concentration perchlorate removal performance in ABR system with heterotrophic combined sulfur autotrophic process. Li H, Li K, Guo J, Chen Z, Han Y, Song Y, Lu C, Hou Y, Zhang D, Zhang Y 33485237
ENCS
20 Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. Manjunath M; Yan J; Youn Y; Drucker KL; Kollmeyer TM; McKinney AM; Zazubovich V; Zhang Y; Costello JF; Eckel-Passow J; Selvin PR; Jenkins RB; Song JS; 33130899
PHYSICS
21 Distributed adaptive fault-tolerant close formation flight control of multiple trailing fixed-wing UAVs. Yu Z, Zhang Y, Jiang B, Yu X, Fu J, Jin Y, Chai T 32680604
ENCS
22 Assessment of regional greenhouse gas emission from beef cattle production: A case study of Saskatchewan in Canada. Chen Z, An C, Fang H, Zhang Y, Zhou Z, Zhou Y, Zhao S 32217321
ENCS
23 Deep model integrated with data correlation analysis for multiple intermittent faults diagnosis. Yang J, Xie G, Yang Y, Zhang Y, Liu W 31174854
ENCS
24 Probability of major depression diagnostic classification using semi-structured versus fully structured diagnostic interviews Levis B; Benedetti A; Riehm KE; Saadat N; Levis AW; Azar M; Rice DB; Chiovitti MJ; Sanchez TA; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; McMillan D; Patten SB; Shrier I; Steele RJ; Ziegelstein RC; Akena DH; Arroll B; Ayalon L; Baradaran HR; Baron M; Beraldi A; Bombardier CH; Butterworth P; Carter G; Chagas MH; Chan JCN; Cholera R; Chowdhary N; Clover K; Conwell Y; de Man-van Ginkel JM; Delgadillo J; Fann JR; Fischer FH; Fischler B; Fung D; Gelaye B; Goodyear-Smith F; Greeno CG; Hall BJ; Hambridge J; Harrison PA; Hegerl U; Hides L; Hobfoll SE; Hudson M; Hyphantis T; Inagaki M; Ismail K; Jetté N; Khamseh ME; Kiely KM; Lamers F; Liu SI; Lotrakul M; Loureiro SR; Löwe B; Marsh L; McGuire A; Mohd Sidik S; Munhoz TN; Muramatsu K; Osório FL; Patel V; Pence BW; Persoons P; Picardi A; Rooney AG; Santos IS; Shaaban J; Sidebottom A; Simning A; Stafford L; Sung S; Tan PLL; Turner A; van der Feltz-Cornelis CM; van Weert HC; Vöhringer PA; White J; Whooley MA; Winkley K; Yamada M; Zhang Y; Thombs BD; 29717691
LIBRARY
25 Antagonistic interactions between two MAP kinase cascades in plant development and immune signaling. Sun T, Nitta Y, Zhang Q, Wu D, Tian H, Lee JS, Zhang Y 29789386
BIOLOGY
26 Biogenic membranes of the chloroplast in Chlamydomonas reinhardtii. Schottkowski M, Peters M, Zhan Y, Rifai O, Zhang Y, Zerges W 23129655
CSFG
27 A Lithium-Sulfur Battery using a 2D Current Collector Architecture with a Large-Sized Sulfur Host Operated under High Areal Loading and Low E/S Ratio. Li M, Zhang Y, Bai Z, Liu WW, Liu T, Gim J, Jiang G, Yuan Y, Luo D, Feng K, Yassar RS, Wang X, Chen Z, Lu J 30368935
ENCS
28 Effects of pool size and spacing on burning rate and flame height of two square heptane pool fires. Wan H, Gao Z, Ji J, Zhang Y, Li K, Wang L 30776594
ENCS
29 Simulation of electromechanical coupling coefficient by modified modal frequency spectrum method including the electrode effect Zhang Y, Wang Z, Cheeke JD 10829640
PHYSICS

 

Title:Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Authors:Chen QAllot ALeaman RIslamaj RDu JFang LWang KXu SZhang YBagherzadeh PBergler SBhatnagar ABhavsar NChang YCLin SJTang WZhang HTavchioski IPollak STian SZhang JOtmakhova YYepes AJDong HWu HDufour RLabrak YChatterjee NTandon KLaleye FAARakotoson LChersoni EGu JFriedrich APujari SCChizhikova MSivadasan NVg SLu Z
Link:https://pubmed.ncbi.nlm.nih.gov/36043400/
DOI:10.1093/database/baac069
Publication:Database : the journal of biological databases and curation
Keywords:
PMID:36043400 Category: Date Added:2022-08-31
Dept Affiliation: ENCS
1 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, MD, Bethesda 20892, USA.
2 School of Biomedical Informatics, UT Health, TX, Houston 77030, USA.
3 Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
4 Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
5 College of Economics and Management, Beijing University of Technology, Beijing, QC, China.
6 CLaC Labs, Concordia University, Montreal, Canada.
7 Navrachana University, Vadodara, India.
8 Graduate Institute of Data Science, Taipei Medical University, Taipei, Taiwan.
9 College of Computer Science and Technology, Dalian University of Technology, Dalian, China.
10 Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia.
11 Jožef Stefan Institute, Ljubljana, Slovenia.
12 Department of Statistics, Florida State University, Tallahassee, FL, USA.
13 School of Computing and Information Systems, University of Melbourne, Melbourne, AU-VIC, Australia.
14 School of Computing Technologies, RMIT University, Melbourne, AU-VIC, Australia.
15 Centre for Medical Informatics, Usher Institute, University of Edinburgh, Edinburgh, UK.
16 Institute of Health Informatics, University College London, London, UK.
17 LS2N, Nantes University, Nantes, France.
18 LIA, Avignon University, Avignon, France.
19 Department of Mathematics, Indian Institute of Technology Delhi, New Delhi, India.
20 Opscidia, Paris, France.
21 Department of Chinese and Bilingual Studies, The Hong Kong Polytechnic University, Hong Kong, China.
22 Bosch Center for Artificial Intelligence, Renningen, Germany.
23 Institute of Computer Science, Heidelberg University, Heidelberg, Germany.
24 SINAI Group, Department of Computer Science, Advanced Studies Center in ICT (CEATIC), Universidad de Jaén, Jaén, Spain.
25 TCS Research, Life Sciences, Hyderabad, India.

Description:

The coronavirus disease 2019 (COVID-19) pandemic has been severely impacting global society since December 2019. The related findings such as vaccine and drug development have been reported in biomedical literature-at a rate of about 10 000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200 000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g. Diagnosis and Treatment) to the articles in LitCovid. The annotated topics have been widely used for navigating the COVID literature, rapidly locating articles of interest and other downstream studies. However, annotating the topics has been the bottleneck of manual curation. Despite the continuing advances in biomedical text-mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset-consisting of over 30 000 articles with manually reviewed topics-was created for training and testing. It is one of the largest multi-label classification datasets in biomedical scientific literature. Nineteen teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181 and 0.9394 for macro-F1-score, micro-F1-score and instance-based F1-score, respectively. Notably, these scores are substantially higher (e.g. 12%, higher for macro F1-score) than the corresponding scores of the state-of-art multi-label classification method. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development. Database URL https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/.





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