Keyword search (4,163 papers available)

"Xiao Y" Authored Publications:

Title Authors PubMed ID
1 Towards user-centered interactive medical image segmentation in VR with an assistive AI agent Spiegler P; Harirpoush A; Xiao Y; 41509996
ENCS
2 Surgical hyperspectral imaging: a systematic review Ali HM; Xiao Y; Kersten-Oertel M; 40824764
ENCS
3 MedCLIP-SAMv2: Towards universal text-driven medical image segmentation Koleilat T; Asgariandehkordi H; Rivaz H; Xiao Y; 40779830
ENCS
4 Joint enhancement of automatic chest x-ray diagnosis and radiological gaze prediction with multistage cooperative learning Qiu Z; Rivaz H; Xiao Y; 40665596
ENCS
5 CASCADE-FSL: Few-shot learning for collateral evaluation in ischemic stroke Aktar M; Tampieri D; Xiao Y; Rivaz H; Kersten-Oertel M; 40250214
ENCS
6 A database of magnetic resonance imaging-transcranial ultrasound co-registration Alizadeh M; Collins DL; Kersten-Oertel M; Xiao Y; 39920905
SOH
7 PreVISE: an efficient virtual reality system for SEEG surgical planning Spiegler P; Abdelsalam H; Hellum O; Hadjinicolaou A; Weil AG; Xiao Y; 39735694
ENCS
8 Virtual reality-based preoperative planning for optimized trocar placement in thoracic surgery: A preliminary study Harirpoush A; Rakovich G; Kersten-Oertel M; Xiao Y; 39720764
ENCS
9 Design, manufacturing, and multi-modal imaging of stereolithography 3D printed flexible intracranial aneurysm phantoms Yalman A; Jafari A; Léger É; Mastroianni MA; Teimouri K; Savoji H; Collins DL; Kadem L; Xiao Y; 39546636
BIOLOGY
10 Expanding a Behavioral View on Digital Health Access: Drivers and Strategies to Promote Equity Kepper MM; Fowler LA; Kusters IS; Davis JW; Baqer M; Sagui-Henson S; Xiao Y; Tarfa A; Yi JC; Gibson B; Heron KE; Alberts NM; Burgermaster M; Njie-Carr VP; Klesges LM; 39088246
PSYCHOLOGY
11 Open access segmentations of intraoperative brain tumor ultrasound images Behboodi B; Carton FX; Chabanas M; de Ribaupierre S; Solheim O; Munkvold BKR; Rivaz H; Xiao Y; Reinertsen I; 39047165
SOH
12 Virtual and Augmented Reality in Ventriculostomy: A Systematic Review Alizadeh M; Xiao Y; Kersten-Oertel M; 38823448
ENCS
13 SCANED: Siamese collateral assessment network for evaluation of collaterals from ischemic damage Aktar M; Xiao Y; Tehrani AKZ; Tampieri D; Rivaz H; Kersten-Oertel M; 38364600
ENCS
14 PILLAR: ParaspInaL muscLe segmentAtion pRoject - a comprehensive online resource to guide manual segmentation of paraspinal muscles from magnetic resonance imaging Anstruther M; Rossini B; Zhang T; Liang T; Xiao Y; Fortin M; 37996857
SOH
15 A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects Xiao Y; Gilmore G; Kai J; Lau JC; Peters T; Khan AR; 37663773
ENCS
16 A dataset of multi-contrast unbiased average MRI templates of a Parkinson's disease population Madge V; Fonov VS; Xiao Y; Zou L; Jackson C; Postuma RB; Dagher A; Fon EA; Collins DL; 37213552
IMAGING
17 Deep learning for collateral evaluation in ischemic stroke with imbalanced data Aktar M; Reyes J; Tampieri D; Rivaz H; Xiao Y; Kersten-Oertel M; 36635594
ENCS
18 Robust landmark-based brain shift correction with a Siamese neural network in ultrasound-guided brain tumor resection Pirhadi A; Salari S; Ahmad MO; Rivaz H; Xiao Y; 36306056
PERFORM
19 DiffeoRaptor: diffeomorphic inter-modal image registration using RaPTOR Masoumi N; Rivaz H; Ahmad MO; Xiao Y; 36173541
ENCS
20 Statistical morphological analysis reveals characteristic paraspinal muscle asymmetry in unilateral lumbar disc herniation Xiao Y; Fortin M; Ahn J; Rivaz H; Peters TM; Battié MC; 34341427
PERFORM
21 Characterizing white matter alterations subject to clinical laterality in drug-naïve de novo Parkinson's disease Xiao Y; Peters TM; Khan AR; 34106502
PERFORM
22 Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms Masoumi N; Belasso CJ; Ahmad MO; Benali H; Xiao Y; Rivaz H; 33683544
PERFORM
23 Automatic collateral circulation scoring in ischemic stroke using 4D CT angiography with low-rank and sparse matrix decomposition. Aktar M, Tampieri D, Rivaz H, Kersten-Oertel M, Xiao Y 32662055
ENCS
24 REtroSpective Evaluation of Cerebral Tumors (RESECT): A clinical database of pre-operative MRI and intra-operative ultrasound in low-grade glioma surgeries. Xiao Y, Fortin M, Unsgård G, Rivaz H, Reinertsen I 28391601
PERFORM
25 A dataset of multi-contrast population-averaged brain MRI atlases of a Parkinson׳s disease cohort. Xiao Y, Fonov V, Chakravarty MM, Beriault S, Al Subaie F, Sadikot A, Pike GB, Bertrand G, Collins DL 28491942
PERFORM
26 Multimodal 18F-Fluciclovine PET/MRI and Ultrasound-Guided Neurosurgery of an Anaplastic Oligodendroglioma. Karlberg A, Berntsen EM, Johansen H, Myrthue M, Skjulsvik AJ, Reinertsen I, Esmaeili M, Dai HY, Xiao Y, Rivaz H, Borghammer P, Solheim O, Eikenes L 28844925
PERFORM
27 Nonlinear deformation of tractography in ultrasound-guided low-grade gliomas resection. Xiao Y, Eikenes L, Reinertsen I, Rivaz H 29299739
PERFORM
28 Intra-operative Video Characterization of Carotid Artery Pulsation Patterns in Case Series with Post-endarterectomy Hypertension and Hyperperfusion Syndrome. Xiao Y, Rivaz H, Kasuya H, Yokosako S, Mindru C, Teitelbaum J, Sirhan D, Sinclair D, Angle M, Lo BWY 29322480
PERFORM
29 Correction to: Nonlinear deformation of tractography in ultrasound-guided low-grade gliomas resection. Xiao Y, Eikenes L, Reinertsen I, Rivaz H 29392538
PERFORM
30 High-Dynamic-Range Ultrasound: Application for Imaging Tendon Pathology. Xiao Y, Boily M, Hashemi HS, Rivaz H 29628224
PERFORM
31 Population-averaged MRI atlases for automated image processing and assessments of lumbar paraspinal muscles. Xiao Y, Fortin M, Battié MC, Rivaz H 30051147
PERFORM
32 ARENA: Inter-modality affine registration using evolutionary strategy. Masoumi N, Xiao Y, Rivaz H 30535826
PERFORM

 

Title:Deep learning for collateral evaluation in ischemic stroke with imbalanced data
Authors:Aktar MReyes JTampieri DRivaz HXiao YKersten-Oertel M
Link:pubmed.ncbi.nlm.nih.gov/36635594/
DOI:10.1007/s11548-022-02826-6
Publication:International journal of computer assisted radiology and surgery
Keywords:4D CTACollateral evaluationEfficientNet B0Ischemic strokeMajority votingTransfer learning
PMID:36635594 Category: Date Added:2023-01-13
Dept Affiliation: ENCS
1 Computer Science and Software Engineering, Concordia University, 1455 boul. De Maisonneuve O., Montreal, QC, H3G 1M8, Canada. m_ktar@encs.concordia.ca.
2 Computer Science and Software Engineering, Concordia University, 1455 boul. De Maisonneuve O., Montreal, QC, H3G 1M8, Canada.
3 Department of Diagnostic Radiology, Kingston Health Sciences Centre, Kingston General Hospital, Kingston, ON, K7L 2V7, Canada.
4 Electrical and Computer Engineering, Concordia University, 1455 boul. De Maisonneuve O., Montreal, QC, H3G 1M8, Canada.

Description:

Purpose: Collateral evaluation is typically done using visual inspection of cerebral images and thus suffers from intra- and inter-rater variability. Large open databases of ischemic stroke patients are rare, limiting the use of deep learning methods in treatment decision-making.

Methods: We adapted a pre-trained EfficientNet B0 network through transfer learning to improve collateral evaluation using slice-based and subject-level classification. Our method uses stacking and overlapping of 2D slices from a patient's 4D computed tomography angiography (CTA) and a majority voting scheme to determine a patient's final collateral grade based on all classified 2D MIPs. Class imbalance is handled in the evaluation process by using the focal loss with class weight to penalize the majority class.

Results: We evaluated our method using a nine-fold cross-validation performed with 83 subjects. Mean sensitivity of 0.71, specificity of 0.84, and a weighted F1 score of 0.71 in multi-class (good, intermediate, and poor) classification were obtained. Considering treatment effect, a dichotomized decision is also made for collateral scoring of a subject based on two classes (good/intermediate and poor) which achieves a sensitivity of 0.89 and specificity of 0.96 with a weighted F1 score of 0.95.

Conclusion: An automatic and robust collateral assessment method that mitigates the issues with the small imbalanced dataset was developed. Computer-aided evaluation of collaterals can help decision-making of ischemic stroke treatment strategy in clinical settings.




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