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PubMed Publications| Keyword search (4,163 papers available) |  |
"Li J" Authored Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Development of an evaporation-driven sampling system for the in situ long-term monitoring of heavy metals in surface water | Li X; Ma H; Shi S; Tian X; Nie L; Han X; Sun J; Chen Z; Li J; Chen K; | 41886856 ENCS |
| 2 | Clinical Manifestations | Jobin B; Frasnelli J; Phillips NA; Boller B; | 41443638 CONCORDIA |
| 3 | Intraspecific complexity in mercury contamination of two harvested fishes revealed by genetics: Food security and conservation implications | Gibelli J; Michaelides S; Won H; Chamlian B; Bampfylde C; Maclean B; Giroux P; Gray QZ; Voyageur M; Jeon HB; Bouchard R; Fraser DJ; | 41380599 BIOLOGY |
| 4 | Identification of five sleep-biopsychosocial profiles with specific neural signatures linking sleep variability with health, cognition, and lifestyle factors | Perrault AA; Kebets V; Kuek NMY; Cross NE; Tesfaye R; Pomares FB; Li J; Chee MWL; Dang-Vu TT; Yeo BTT; | 41056215 HKAP |
| 5 | The predictive role of olfactory identification on episodic memory and mild cognitive impairment: Results from the CIMA-Q cohort | Jobin B; Phillips NA; Frasnelli J; Boller B; | 40944318 PSYCHOLOGY |
| 6 | Exon junction complexes regulate osteoclast-induced bone resorption by influencing the NFATc1 m6A distribution through the "shield effect" | Sun B; Yang JG; Wang Z; Wang Z; Feng W; Li X; Liu SN; Li J; Zhu YQ; Zhang P; Wang W; | 40051055 ENCS |
| 7 | Genomics-Enabled Mixed-Stock Analysis Uncovers Intraspecific Migratory Complexity and Detects Unsampled Populations in a Harvested Fish | Gibelli J; Won H; Michaelides S; Jeon HB; Fraser DJ; | 39995301 BIOLOGY |
| 8 | Widespread admixture blurs population structure and confounds Lake Trout (Salvelinus namaycush) conservation even in the genomic era | Bernos TA; Gibelli J; Michaelides S; Won H; Jeon HB; Marin K; Boguski DA; Janjua MY; Gallagher CP; Howland KL; Fraser DJ; | 39730611 BIOLOGY |
| 9 | Sustainable and energy-saving hydrogen production via binder-free and in situ electrodeposited Ni-Mn-S nanowires on Ni-Cu 3-D substrates | Barati Darband G; Iravani D; Zhang M; Maleki M; Huang S; Khoshfetrat SM; Andaveh R; Li J; | 39655509 ENCS |
| 10 | Integrative approach to mitigate chromium toxicity in soil and enhance antioxidant activities in rice (Oryza sativa L.) using magnesium-iron nanocomposite and Staphylococcus aureus strains | Ali MA; Sardar MF; Dar AA; Niaz M; Ali J; Wang Q; Zheng Y; Luo Y; Albasher G; Li F; | 39190219 ENCS |
| 11 | A multidimensional investigation of sleep and biopsychosocial profiles with associated neural signatures | Perrault AA; Kebets V; Kuek NMY; Cross NE; Tesfaye R; Pomares FB; Li J; Chee MWL; Dang-Vu TT; Yeo BTT; | 38659875 HKAP |
| 12 | A multidimensional investigation of sleep and biopsychosocialprofiles with associated neural signatures | Perrault AA; Kebets V; Kuek NMY; Cross NE; Tesfaye R; Pomares FB; Li J; Chee MWL; Dang-Vu TT; Thomas Yeo BT; | 38559143 HKAP |
| 13 | Alternative Oxidase: From Molecule and Function to Future Inhibitors | Li J; Yang S; Wu Y; Wang R; Liu Y; Liu J; Ye Z; Tang R; Whiteway M; Lv Q; Yan L; | 38524433 BIOLOGY |
| 14 | Exosome-targeted delivery of METTL14 regulates NFATc1 m6A methylation levels to correct osteoclast-induced bone resorption | Yang JG; Sun B; Wang Z; Li X; Gao JH; Qian JJ; Li J; Wei WJ; Zhang P; Wang W; | 37957146 ENCS |
| 15 | Species-specific protein-protein interactions govern the humanization of the 20S proteasome in yeast | Sultana S; Abdullah M; Li J; Hochstrasser M; Kachroo AH; | 37364278 BIOLOGY |
| 16 | The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum | Li J; Chroumpi T; Garrigues S; Kun RS; Meng J; Salazar-Cerezo S; Aguilar-Pontes MV; Zhang Y; Tejomurthula S; Lipzen A; Ng V; Clendinen CS; Tolic N; Grigoriev IV; Tsang A; Mäkelä MR; Snel B; Peng M; de Vries RP; | 36547648 BIOLOGY |
| 17 | Transcriptional Profiling of the Candida albicans Response to the DNA Damage Agent Methyl Methanesulfonate | Feng Y; Zhang Y; Li J; Omran RP; Whiteway M; Feng J; | 35886903 BIOLOGY |
| 18 | Perfluoroalkyl and polyfluoroalkyl substances (PFASs) in groundwater: current understandings and challenges to overcome | Zhao Z; Li J; Zhang X; Wang L; Wang J; Lin T; | 35593984 CHEMBIOCHEM |
| 19 | The Effect of Stimulus Duration on the Nostril Localization of Eucalyptol. | Frasnelli J, Gingras-Lessard F, Robert J, Steffener J | 28334125 PERFORM |
| 20 | The eIF2α Kinase GCN2 Modulates Period and Rhythmicity of the Circadian Clock by Translational Control of Atf4. | Pathak SS, Liu D, Li T, de Zavalia N, Zhu L, Li J, Karthikeyan R, Alain T, Liu AC, Storch KF, Kaufman RJ, Jin VX, Amir S, Sonenberg N, Cao R | 31522764 CSBN |
| 21 | Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. | Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C | 30209345 ENCS |
| Title: | The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum | ||||
| Authors: | Li J, Chroumpi T, Garrigues S, Kun RS, Meng J, Salazar-Cerezo S, Aguilar-Pontes MV, Zhang Y, Tejomurthula S, Lipzen A, Ng V, Clendinen CS, Tolic N, Grigoriev IV, Tsang A, Mäkelä MR, Snel B, Peng M, de Vries RP | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/36547648/ | ||||
| DOI: | 10.3390/jof8121315 | ||||
| Publication: | Journal of fungi (Basel, Switzerland) | ||||
| Keywords: | metabolism network; orthology-based approach; sugar catabolism; transcriptome analysis; | ||||
| PMID: | 36547648 | Category: | Date Added: | 2022-12-22 | |
| Dept Affiliation: |
BIOLOGY
1 Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. 2 Department of Biology, Concordia University, 7141 Sherbrooke Street West, Montreal, QC H4B 1R6, Canada. 3 USA Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA. 4 Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA. 5 Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94598, USA. 6 Department of Microbiology, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland. 7 Theoretical Biology and Bioinformatics, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. |
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Description: |
Fungi play a critical role in the global carbon cycle by degrading plant polysaccharides to small sugars and metabolizing them as carbon and energy sources. We mapped the well-established sugar metabolic network of Aspergillus niger to five taxonomically distant species (Aspergillus nidulans, Penicillium subrubescens, Trichoderma reesei, Phanerochaete chrysosporium and Dichomitus squalens) using an orthology-based approach. The diversity of sugar metabolism correlates well with the taxonomic distance of the fungi. The pathways are highly conserved between the three studied Eurotiomycetes (A. niger, A. nidulans, P. subrubescens). A higher level of diversity was observed between the T. reesei and A. niger, and even more so for the two Basidiomycetes. These results were confirmed by integrative analysis of transcriptome, proteome and metabolome, as well as growth profiles of the fungi growing on the corresponding sugars. In conclusion, the establishment of sugar pathway models in different fungi revealed the diversity of fungal sugar conversion and provided a valuable resource for the community, which would facilitate rational metabolic engineering of these fungi as microbial cell factories. |
