| Keyword search (4,163 papers available) | ![]() |
"fungi" Keyword-tagged Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Season and city shape urban bioaerosol composition beyond vegetation and socioeconomic gradients | Poirier S; Rondeau-Leclaire J; Faticov M; Roy A; Lajeunesse G; Lucier JF; Tardif S; Kembel SW; Ziter C; Laprise C; Paquette A; Girard C; Laforest-Lapointe I; | 41785576 BIOLOGY |
| 2 | Contrasting microbial assembly patterns in the woody endosphere of hybrid and non-hybrid em Populus /em trees | Grant KR; Kembel SW; Naik S; Dayanandan S; | 41089252 BIOLOGY |
| 3 | The Bug-Network (BugNet): A Global Experimental Network Testing the Effects of Invertebrate Herbivores and Fungal Pathogens on Plant Communities and Ecosystem Function in Open Ecosystems | Kempel A; Adamidis GC; Anadón JD; Atkinson J; Auge H; Avtzis D; Bachelot B; Bashirzadeh M; Bota JL; Classen A; Constantinou I; Crawley M; de Bellis T; Dostal P; Ebeling A; Eisenhauer N; Eldridge DJ; Encina G; Estrada C; Everingham S; Fanin N; Feng Y; Gaspar M; Gooriah L; Graff P; Montalván EG; Montalván PG; Hartke TR; Huang L; Jochum M; Kaljund K; Karmiris I; Koorem K; Korell L; Laine AL; le Provost G; Lessard JP; Liu M; Liu X; Liu Y; Llancabure J; Loïez S; Loydi A; Marrero H; Gockel S; Montoya A; Münzbergo | 41080499 ENCS |
| 4 | An examination of the quinic acid utilization genes in Aspergillus niger reveals the involvement of two pH-dependent permeases | Sgro M; Reid ID; Arentshorst M; Ram AFJ; Tsang A; | 40853219 GENOMICS |
| 5 | The temperate forest phyllosphere and rhizosphere microbiome: a case study of sugar maple | Enea M; Beauregard J; De Bellis T; Faticov M; Laforest-Lapointe I; | 39881993 BIOLOGY |
| 6 | Functional analysis of the protocatechuate branch of the β-ketoadipate pathway in Aspergillus niger | Sgro M; Chow N; Olyaei F; Arentshorst M; Geoffrion N; Ram AFJ; Powlowski J; Tsang A; | 37399977 BIOLOGY |
| 7 | Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics | Gruninger RJ; Tsang A; McAllister TA; | 37149538 CSFG |
| 8 | Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora | Marinovíc M; Di Falco M; Aguilar Pontes MV; Gorzsás A; Tsang A; de Vries RP; Mäkelä MR; Hildén K; | 35892327 CSFG |
| 9 | Screening of novel fungal Carbohydrate Esterase family 1 enzymes identifies three novel dual feruloyl/acetyl xylan esterases | Dilokpimol A; Verkerk B; Li X; Bellemare A; Lavallee M; Frommhagen M; Nørmølle Underlin E; Kabel MA; Powlowski J; Tsang A; de Vries RP; | 35187647 CSFG |
| 10 | The Canadian Fungal Research Network: current challenges and future opportunities. | Horianopoulos LC, Gluck-Thaler E, Benoit Gelber I, Cowen LE, Geddes-McAlister J, Landry CR, Schwartz IS, Scott JA, Sellam A, Sheppard DC, Spribille T, Subramaniam R, Walker AK, Harris SD, Shapiro RS, Gerstein A | 32717148 BIOLOGY |
| 11 | Discovery and Expression of Thermostable LPMOs from Thermophilic Fungi for Producing Efficient Lignocellulolytic Enzyme Cocktails. | Agrawal D, Basotra N, Balan V, Tsang A, Chadha BS | 31792786 CSFG |
| 12 | Shared mycorrhizae but distinct communities of other root-associated microbes on co-occurring native and invasive maples. | DeBellis T, Kembel SW, Lessard JP | 31392089 BIOLOGY |
| 13 | Enzymes of early-diverging, zoosporic fungi. | Lange L, Barrett K, Pilgaard B, Gleason F, Tsang A | 31309267 CSFG |
| 14 | Mycothermus thermophilus gen. et comb. nov., a new home for the itinerant thermophile Scytalidium thermophilum (Torula thermophila). | Natvig DO, Taylor JW, Tsang A, Hutchinson MI, Powell AJ | 25550298 CSFG |
| 15 | Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics. | Gruninger RJ, Reid I, Forster RJ, Tsang A, McAllister TA | 28417376 CSFG |
| 16 | Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry | Robert J Gruninger | 28417377 CSFG |
| 17 | Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates. | Jones DR, Uddin MS, Gruninger RJ, Pham TTM, Thomas D, Boraston AB, Briggs J, Pluvinage B, McAllister TA, Forster RJ, Tsang A, Selinger LB, Abbott DW | 28588026 CSFG |
| 18 | Saccharification efficiencies of multi-enzyme complexes produced by aerobic fungi. | Badhan A, Huang J, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister T | 29803771 CSFG |
| 19 | Introduction: Overview of Fungal Genomics. | de Vries RP, Grigoriev IV, Tsang A | 29876804 CSFG |
| 20 | Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates. | Gruninger RJ, Nguyen TTM, Reid ID, Yanke JL, Wang P, Abbott DW, Tsang A, McAllister T | 30061875 CSFG |
| 21 | Thermostable xylanases from thermophilic fungi and bacteria: Current perspective. | Chadha BS, Kaur B, Basotra N, Tsang A, Pandey A | 30679061 CSFG |
| Title: | Functional analysis of the protocatechuate branch of the β-ketoadipate pathway in Aspergillus niger | ||||
| Authors: | Sgro M, Chow N, Olyaei F, Arentshorst M, Geoffrion N, Ram AFJ, Powlowski J, Tsang A | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/37399977/ | ||||
| DOI: | 10.1016/j.jbc.2023.105003 | ||||
| Publication: | The Journal of biological chemistry | ||||
| Keywords: | 3,4-dihydroxybenzoic acid; Aspergillus; catabolism; enzyme kinetics; fungi; gene knockout; protocatechuic acid; transcriptomics; β; -ketoadipate; | ||||
| PMID: | 37399977 | Category: | Date Added: | 2023-07-04 | |
| Dept Affiliation: |
BIOLOGY
1 Department of Biology, Concordia University, Montreal, Quebec, Canada; Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada. 2 Department of Chemistry and Biochemistry, Concordia University, Montreal, Quebec, Canada. 3 Institute of Biology Leiden, Microbial Sciences, Leiden University, Leiden, The Netherlands. 4 Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada. 5 Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada; Department of Chemistry and Biochemistry, Concordia University, Montreal, Quebec, Canada. 6 Department of Biology, Concordia University, Montreal, Quebec, Canada; Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada. Electronic address: adrian.tsang@concordia.ca. |
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Description: |
Bacteria and fungi catabolize plant-derived aromatic compounds by funneling into one of seven dihydroxylated aromatic intermediates, which then undergo ring fission and conversion to TCA cycle intermediates. Two of these intermediates, protocatechuic acid and catechol, converge on ß-ketoadipate which is further cleaved to succinyl-CoA and acetyl-CoA. These ß-ketoadipate pathways have been well characterized in bacteria. The corresponding knowledge of these pathways in fungi is incomplete. Characterization of these pathways in fungi would expand our knowledge and improve the valorization of lignin-derived compounds. Here, we used homology to characterize bacterial or fungal genes to predict the genes involved in the ß-ketoadipate pathway for protocatechuate utilization in the filamentous fungus Aspergillus niger. We further used the following approaches to refine the assignment of the pathway genes: whole transcriptome sequencing to reveal genes upregulated in the presence of protocatechuic acid; deletion of candidate genes to observe their ability to grow on protocatechuic acid; determination by mass spectrometry of metabolites accumulated by deletion mutants; and enzyme assays of the recombinant proteins encoded by candidate genes. Based on the aggregate experimental evidence, we assigned the genes for the five pathway enzymes as follows: NRRL3_01405 (prcA) encodes protocatechuate 3,4-dioxygenase; NRRL3_02586 (cmcA) encodes 3-carboxy-cis,cis-muconate cyclase; NRRL3_01409 (chdA) encodes 3-carboxymuconolactone hydrolase/decarboxylase; NRRL3_01886 (kstA) encodes ß-ketoadipate:succinyl-CoA transferase; and NRRL3_01526 (kctA) encodes ß-ketoadipyl-CoA thiolase. Strain carrying ?NRRL3_00837 could not grow on protocatechuic acid, suggesting that it is essential for protocatechuate catabolism. Its function is unknown as recombinant NRRL3_00837 did not affect the in vitro conversion of protocatechuic acid to ß-ketoadipate. |



