Keyword search (4,163 papers available)

"enzymes" Keyword-tagged Publications:

Title Authors PubMed ID
1 Functional screening pipeline to uncover laccase-like multicopper oxidase enzymes that transform industrial lignins Sharan AA; Bellemare A; DiFalco M; Tsang A; Vuong TV; Edwards EA; Master ER; 38000639
CSFG
2 Identification of a Conserved Transcriptional Activator-Repressor Module Controlling the Expression of Genes Involved in Tannic Acid Degradation and Gallic Acid Utilization in Aspergillus niger Arentshorst M; Falco MD; Moisan MC; Reid ID; Spaapen TOM; van Dam J; Demirci E; Powlowski J; Punt PJ; Tsang A; Ram AFJ; 37744122
CSFG
3 Evidence for ligninolytic activity of the ascomycete fungus Podospora anserina. van Erven G, Kleijn AF, Patyshakuliyeva A, Di Falco M, Tsang A, de Vries RP, van Berkel WJH, Kabel MA 32322305
CSFG
4 Effect and ameliorative mechanisms of polyoxometalates on the denitrification under sulfonamide antibiotics stress. Guo H, Chen Z, Lu C, Guo J, Li H, Song Y, Han Y, Hou Y 32145698
ENCS
5 Enzymes of early-diverging, zoosporic fungi. Lange L, Barrett K, Pilgaard B, Gleason F, Tsang A 31309267
CSFG
6 Transcriptome and exoproteome analysis of utilization of plant-derived biomass by Myceliophthora thermophila. Kolbusz MA, Di Falco M, Ishmael N, Marqueteau S, Moisan MC, Baptista CDS, Powlowski J, Tsang A 24881579
BIOLOGY
7 Identification of novel enzymes to enhance the ruminal digestion of barley straw Badhan A; Ribeiro GO; Jones DR; Wang Y; Abbott DW; Di Falco M; Tsang A; McAllister TA; 29621684
CSFG
8 Saccharification efficiencies of multi-enzyme complexes produced by aerobic fungi. Badhan A, Huang J, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister T 29803771
CSFG
9 New recombinant fibrolytic enzymes for improved in vitro ruminal fiber degradability of barley straw. Ribeiro GO, Badhan A, Huang J, Beauchemin KA, Yang W, Wang Y, Tsang A, McAllister TA 30053012
CSFG
10 Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates. Gruninger RJ, Nguyen TTM, Reid ID, Yanke JL, Wang P, Abbott DW, Tsang A, McAllister T 30061875
CSFG
11 The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jiménez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, Debets AJM 30368956
CSFG

 

Title:The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet.
Authors:Grum-Grzhimaylo AAFalkoski DLvan den Heuvel JValero-Jiménez CAMin BChoi IGLipzen ADaum CGAanen DKTsang AHenrissat BBilanenko ENde Vries RPvan Kan JALGrigoriev IVDebets AJM
Link:https://www.ncbi.nlm.nih.gov/pubmed/30368956?dopt=Abstract
DOI:10.1111/mec.14912
Publication:Molecular ecology
Keywords:Sodiomyces alkalinusHGTalkalophilic fungusbrine shrimpsenzymesprokaryotes
PMID:30368956 Category:Mol Ecol Date Added:2019-06-07
Dept Affiliation: CSFG
1 Laboratory of Genetics, Wageningen University, Wageningen, The Netherlands.
2 Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands.
3 R&D Department, Novozymes Latin America, Araucária, Paraná, Brazil.
4 Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.
5 US Department of Energy Joint Genome Institute, Walnut Creek, California.
6 Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, Korea.
7 Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada.
8 Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille University, Marseille, France.
9 Institut National de la Recherche Agronomique, USC 1408 AFMB, Marseille, France.
10 Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
11 Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
12 Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands.

Description:

The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet.

Mol Ecol. 2018 12;27(23):4808-4819

Authors: Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jiménez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, Debets AJM

Abstract

Sodiomyces alkalinus is one of the very few alkalophilic fungi, adapted to grow optimally at high pH. It is widely distributed at the plant-deprived edges of extremely alkaline lakes and locally abundant. We sequenced the genome of S. alkalinus and reconstructed evolution of catabolic enzymes, using a phylogenomic comparison. We found that the genome of S. alkalinus is larger, but its predicted proteome is smaller and heavily depleted of both plant-degrading enzymes and proteinases, when compared to its closest plant-pathogenic relatives. Interestingly, despite overall losses, S. alkalinus has retained many proteinases families and acquired bacterial cell wall-degrading enzymes, some of them via horizontal gene transfer from bacteria. This fungus has very potent proteolytic activity at high pH values, but slowly induced low activity of cellulases and hemicellulases. Our experimental and in silico data suggest that plant biomass, a common food source for most fungi, is not a preferred substrate for S. alkalinus in its natural environment. We conclude that the fungus has abandoned the ancestral plant-based diet and has become specialized in a more protein-rich food, abundantly available in soda lakes in the form of prokaryotes and small crustaceans.

PMID: 30368956 [PubMed - in process]





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