Keyword search (4,163 papers available)

"J Phys Chem B" Category Publications:

Title Authors PubMed ID
1 Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f. Shafiei G, Levenberg A, Lujan MA, Picorel R, Zazubovich V 31763829
PHYSICS
2 How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes? Zazubovich V, Jankowiak R 31265294
CHEMISTRY
3 Comparison of Electronic and Physicochemical Properties between Imidazolium-Based and Pyridinium-Based Ionic Liquids. Wu C, De Visscher A, Gates ID 29889524
ENCS
4 Low-temperature protein dynamics of the B800 molecules in the LH2 light-harvesting complex: spectral hole burning study and comparison with single photosynthetic complex spectroscopy. Grozdanov D, Herascu N, Reinot T, Jankowiak R, Zazubovich V 20166717
PHYSICS
5 Parameters of the protein energy landscapes of several light-harvesting complexes probed via spectral hole growth kinetics measurements. Herascu N, Najafi M, Amunts A, Pieper J, Irrgang KD, Picorel R, Seibert M, Zazubovich V 21391534
PHYSICS
6 Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures. Herascu N, Ahmouda S, Picorel R, Seibert M, Jankowiak R, Zazubovich V 22046956
PHYSICS
7 Spectral hole burning, recovery, and thermocycling in chlorophyll-protein complexes: distributions of barriers on the protein energy landscape. Najafi M, Herascu N, Seibert M, Picorel R, Jankowiak R, Zazubovich V 22957798
PHYSICS
8 Modeling of various optical spectra in the presence of slow excitation energy transfer in dimers and trimers with weak interpigment coupling: FMO as an example. Herascu N, Kell A, Acharya K, Jankowiak R, Blankenship RE, Zazubovich V 24506338
PHYSICS
9 Fluorescence line narrowing and Δ-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores. Zazubovich V 25369116
PHYSICS
10 Conformational Changes in Pigment-Protein Complexes at Low Temperatures-Spectral Memory and a Possibility of Cooperative Effects. Najafi M, Herascu N, Shafiei G, Picorel R, Zazubovich V 25985255
PHYSICS
11 Monte Carlo Modeling of Spectral Diffusion Employing Multiwell Protein Energy Landscapes: Application to Pigment-Protein Complexes Involved in Photosynthesis. Najafi M, Zazubovich V 26020801
PHYSICS
12 Probing Energy Landscapes of Cytochrome b6f with Spectral Hole Burning: Effects of Deuterated Solvent and Detergent. Levenberg A, Shafiei G, Lujan MA, Giannacopoulos S, Picorel R, Zazubovich V 28956922
PHYSICS
13 Effect of Saturated Very Long-Chain Fatty Acids on the Organization of Lipid Membranes: A Study Combining (2)H NMR Spectroscopy and Molecular Dynamics Simulations Adrian Paz Ramos 27351151
CERMM
14 Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. Herascu N, Hunter MS, Shafiei G, Najafi M, Johnson TW, Fromme P, Zazubovich V 27661089
CHEMBIOCHEM
15 Mechanism of the Nitric Oxide Dioxygenase Reaction of Mycobacterium tuberculosis Hemoglobin N Lavinia A Carabet 28835102
CERMM
16 Cation-π Interactions between Quaternary Ammonium Ions and Amino Acid Aromatic Groups in Aqueous Solution Esam A Orabi 29397727
CERMM
17 Modeling Protein S-Aromatic Motifs Reveals Their Structural and Redox Flexibility Esam A Orabi 29533644
CERMM

 

Title:Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures.
Authors:Herascu NAhmouda SPicorel RSeibert MJankowiak RZazubovich V
Link:https://www.ncbi.nlm.nih.gov/pubmed/22046956?dopt=Abstract
Publication:
Keywords:
PMID:22046956 Category:J Phys Chem B Date Added:2019-06-04
Dept Affiliation: PHYSICS
1 Department of Physics, Concordia University, Montreal, Quebec, Canada.

Description:

Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures.

J Phys Chem B. 2011 Dec 22;115(50):15098-109

Authors: Herascu N, Ahmouda S, Picorel R, Seibert M, Jankowiak R, Zazubovich V

Abstract

Effects of the distributions of excitation energy transfer (EET) rates (homogeneous line widths) on the nonphotochemical (resonant) spectral hole burning (SHB) processes in photosynthetic chlorophyll-protein complexes (reaction center [RC] and CP43 antenna of Photosystem II from spinach) are considered. It is demonstrated that inclusion of such a distribution results in somewhat more dispersive hole burning kinetics. More importantly, however, inclusion of the EET rate distributions strongly affects the dependence of the hole width on the fractional hole depth. Different types of line width distributions have been explored, including those resulting from Förster type EET between weakly interacting pigments as well as Gaussian ones, which may be a reasonable approximation for those resulting, for instance, from so-called extended Förster models. For Gaussian line width distributions, it is possible to determine the parameters of both line width and tunneling parameter distributions from SHB data without a priori knowledge of any of them. Concerning more realistic asymmetric distributions, we demonstrate, using the simple example of CP43 antenna, that one can use SHB modeling to estimate electrostatic couplings between pigments and support or exclude assignment of certain pigment(s) to a particular state.

PMID: 22046956 [PubMed - indexed for MEDLINE]





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