PERFORM Publications

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Title		Authors	PubMed ID
1	Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f.	Shafiei G, Levenberg A, Lujan MA, Picorel R, Zazubovich V	31763829 PHYSICS
2	How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes?	Zazubovich V, Jankowiak R	31265294 CHEMISTRY
3	Comparison of Electronic and Physicochemical Properties between Imidazolium-Based and Pyridinium-Based Ionic Liquids.	Wu C, De Visscher A, Gates ID	29889524 ENCS
4	Low-temperature protein dynamics of the B800 molecules in the LH2 light-harvesting complex: spectral hole burning study and comparison with single photosynthetic complex spectroscopy.	Grozdanov D, Herascu N, Reinot T, Jankowiak R, Zazubovich V	20166717 PHYSICS
5	Parameters of the protein energy landscapes of several light-harvesting complexes probed via spectral hole growth kinetics measurements.	Herascu N, Najafi M, Amunts A, Pieper J, Irrgang KD, Picorel R, Seibert M, Zazubovich V	21391534 PHYSICS
6	Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures.	Herascu N, Ahmouda S, Picorel R, Seibert M, Jankowiak R, Zazubovich V	22046956 PHYSICS
7	Spectral hole burning, recovery, and thermocycling in chlorophyll-protein complexes: distributions of barriers on the protein energy landscape.	Najafi M, Herascu N, Seibert M, Picorel R, Jankowiak R, Zazubovich V	22957798 PHYSICS
8	Modeling of various optical spectra in the presence of slow excitation energy transfer in dimers and trimers with weak interpigment coupling: FMO as an example.	Herascu N, Kell A, Acharya K, Jankowiak R, Blankenship RE, Zazubovich V	24506338 PHYSICS
9	Fluorescence line narrowing and Δ-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores.	Zazubovich V	25369116 PHYSICS
10	Conformational Changes in Pigment-Protein Complexes at Low Temperatures-Spectral Memory and a Possibility of Cooperative Effects.	Najafi M, Herascu N, Shafiei G, Picorel R, Zazubovich V	25985255 PHYSICS
11	Monte Carlo Modeling of Spectral Diffusion Employing Multiwell Protein Energy Landscapes: Application to Pigment-Protein Complexes Involved in Photosynthesis.	Najafi M, Zazubovich V	26020801 PHYSICS
12	Probing Energy Landscapes of Cytochrome b6f with Spectral Hole Burning: Effects of Deuterated Solvent and Detergent.	Levenberg A, Shafiei G, Lujan MA, Giannacopoulos S, Picorel R, Zazubovich V	28956922 PHYSICS
13	Effect of Saturated Very Long-Chain Fatty Acids on the Organization of Lipid Membranes: A Study Combining (2)H NMR Spectroscopy and Molecular Dynamics Simulations	Adrian Paz Ramos	27351151 CERMM
14	Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States.	Herascu N, Hunter MS, Shafiei G, Najafi M, Johnson TW, Fromme P, Zazubovich V	27661089 CHEMBIOCHEM
15	Mechanism of the Nitric Oxide Dioxygenase Reaction of Mycobacterium tuberculosis Hemoglobin N	Lavinia A Carabet	28835102 CERMM
16	Cation-π Interactions between Quaternary Ammonium Ions and Amino Acid Aromatic Groups in Aqueous Solution	Esam A Orabi	29397727 CERMM
17	Modeling Protein S-Aromatic Motifs Reveals Their Structural and Redox Flexibility	Esam A Orabi	29533644 CERMM

Title:	Fluorescence line narrowing and Δ-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores.
Authors:	Zazubovich V
Link:	https://www.ncbi.nlm.nih.gov/pubmed/25369116?dopt=Abstract
Publication:
Keywords:
PMID:	25369116	Category:	J Phys Chem B	Date Added:	2019-06-04
Dept Affiliation:	PHYSICS 1 Department of Physics, Concordia University , 7141 Sherbrooke Street West, Montreal H4B 1R6, Quebec, Canada.

Description:

Fluorescence line narrowing and ?-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores.

J Phys Chem B. 2014 Nov 26;118(47):13535-43

Authors: Zazubovich V

Abstract

The results of simulations of fluorescence line narrowed (FLN) and ?-FLN spectra of weakly coupled chromophore dimers and trimers, connected by slow (hundreds of picoseconds) excitation energy transfer and embedded in amorphous solids such as proteins, are presented. The model includes wavelength-dependent excitation energy transfer (EET) rate distributions converted to nonidentical sub- site distribution function (sub-SDF) (one for each EET rate), as well as spectral hole burning in pigments excited via EET. Emission of the donor molecules and realistic EET probability dependence on the donor-acceptor energy gap are also included. The shapes of the FLN and ?-FLN spectra are very sensitive to even small variations of interpigment coupling in this weak-coupling regime, and proper modeling is essential for extracting correct parameters from the experimental spectra. Applications of the model to the trimeric FMO complex and the dimeric cytochrome b6f are demonstrated.

PMID: 25369116 [PubMed - indexed for MEDLINE]

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