Keyword search (4,164 papers available)

"Zazubovich V" Authored Publications:

Title Authors PubMed ID
1 Nonphotochemical Spectral Hole Burning Study of Modified LH2 Complex from em Rbl. acidophilus /em : Do Parts of the Pigment Molecule Affect Small Light-Induced Structural Changes? Levenberg A; Trempe A; Lujan MA; Picorel R; Zazubovich V; 41802209
PHYSICS
2 Rigorous Quantum-Mechanical Modeling of Tunneling-Based Structural Changes Associated with Line Shifts in Optical Spectroscopy Experiments in Pigment-Protein Complexes Eng-Michell J; Yi B; Tan X; Garashchuk S; Zazubovich V; 41662623
PHYSICS
3 High-Resolution Frequency-Domain Spectroscopic and Modeling Studies of Photosystem I (PSI), PSI Mutants and PSI Supercomplexes Zazubovich V; Jankowiak R; 38612659
PHYSICS
4 Identification of Residues Potentially Involved in Optical Shifts in the Water-Soluble Chlorophyll a-Binding Protein through Molecular Dynamics Simulations Mai M; Zazubovich V; Mansbach RA; 38299975
PHYSICS
5 Frequency-Domain Spectroscopic Study of the Photosystem I Supercomplexes, Isolated IsiA Monomers, and the Intact IsiA Ring Reinot T; Khmelnitskiy A; Zazubovich V; Toporik H; Mazor Y; Jankowiak R; 36065077
PHYSICS
6 Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. Manjunath M; Yan J; Youn Y; Drucker KL; Kollmeyer TM; McKinney AM; Zazubovich V; Zhang Y; Costello JF; Eckel-Passow J; Selvin PR; Jenkins RB; Song JS; 33130899
PHYSICS
7 Bound detergent molecules in bacterial reaction centers facilitate detection of tetryl explosive. Modafferi D, Zazubovich V, Kálmán L 32632533
PHYSICS
8 Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f. Shafiei G, Levenberg A, Lujan MA, Picorel R, Zazubovich V 31763829
PHYSICS
9 How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes? Zazubovich V, Jankowiak R 31265294
CHEMISTRY
10 Low-temperature protein dynamics of the B800 molecules in the LH2 light-harvesting complex: spectral hole burning study and comparison with single photosynthetic complex spectroscopy. Grozdanov D, Herascu N, Reinot T, Jankowiak R, Zazubovich V 20166717
PHYSICS
11 Parameters of the protein energy landscapes of several light-harvesting complexes probed via spectral hole growth kinetics measurements. Herascu N, Najafi M, Amunts A, Pieper J, Irrgang KD, Picorel R, Seibert M, Zazubovich V 21391534
PHYSICS
12 Self-assembly and sensor response of photosynthetic reaction centers on screen-printed electrodes. Bhalla V, Zazubovich V 22027137
PHYSICS
13 Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures. Herascu N, Ahmouda S, Picorel R, Seibert M, Jankowiak R, Zazubovich V 22046956
PHYSICS
14 Spectral hole burning, recovery, and thermocycling in chlorophyll-protein complexes: distributions of barriers on the protein energy landscape. Najafi M, Herascu N, Seibert M, Picorel R, Jankowiak R, Zazubovich V 22957798
PHYSICS
15 Modeling of various optical spectra in the presence of slow excitation energy transfer in dimers and trimers with weak interpigment coupling: FMO as an example. Herascu N, Kell A, Acharya K, Jankowiak R, Blankenship RE, Zazubovich V 24506338
PHYSICS
16 On the Controversial Nature of the 825 nm Exciton Band in the FMO Protein Complex. Kell A, Acharya K, Zazubovich V, Jankowiak R 26269993
PHYSICS
17 Fluorescence line narrowing and Δ-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores. Zazubovich V 25369116
PHYSICS
18 Conformational Changes in Pigment-Protein Complexes at Low Temperatures-Spectral Memory and a Possibility of Cooperative Effects. Najafi M, Herascu N, Shafiei G, Picorel R, Zazubovich V 25985255
PHYSICS
19 Monte Carlo Modeling of Spectral Diffusion Employing Multiwell Protein Energy Landscapes: Application to Pigment-Protein Complexes Involved in Photosynthesis. Najafi M, Zazubovich V 26020801
PHYSICS
20 On the Conflicting Estimations of Pigment Site Energies in Photosynthetic Complexes: A Case Study of the CP47 Complex. Reinot T, Chen J, Kell A, Jassas M, Robben KC, Zazubovich V, Jankowiak R 27279733
PHYSICS
21 A simple and efficient method to prepare pure dimers and monomers of the cytochrome b 6 f complex from spinach. Luján MA, Lorente P, Zazubovich V, Picorel R 28374305
PHYSICS
22 Probing Energy Landscapes of Cytochrome b6f with Spectral Hole Burning: Effects of Deuterated Solvent and Detergent. Levenberg A, Shafiei G, Lujan MA, Giannacopoulos S, Picorel R, Zazubovich V 28956922
PHYSICS
23 Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. Herascu N, Hunter MS, Shafiei G, Najafi M, Johnson TW, Fromme P, Zazubovich V 27661089
CHEMBIOCHEM

 

Title:How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes?
Authors:Zazubovich VJankowiak R
Link:https://www.ncbi.nlm.nih.gov/pubmed/31265294?dopt=Abstract
DOI:10.1021/acs.jpcb.9b03806
Publication:The journal of physical chemistry. B
Keywords:
PMID:31265294 Category:J Phys Chem B Date Added:2019-07-03
Dept Affiliation: CHEMISTRY
1 Department of Physics , Concordia University , 7141 Sherbrooke Street West , Montreal H4B 1R6 , Quebec , Canada.
2 Department of Chemistry , Kansas State University , Manhattan , Kansas 66506 , United States.

Description:

How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes?

J Phys Chem B. 2019 Jul 02;:

Authors: Zazubovich V, Jankowiak R

Abstract

For the first time, we combined Monte Carlo and nonphotochemical hole burning (NPHB) master equation approaches to allow for ultrahigh-resolution (<0.005 cm-1, smaller than the typical homogeneous line widths at 5 K) simulations of the NPHB spectra of dimers and trimers of interacting pigments. These simulations reveal significant differences between the zero-phonon hole (ZPH) action spectrum and the site-distribution function (SDF) of the lowest-energy state. The NPHB of the lowest-energy pigment, following the excitation energy transfer (EET) from the higher-energy pigments which are excited directly, results in the shifts of all excited states. These shifts affect the ZPH action spectra and EET times derived from the widths of the spectral holes burned in the donor-dominated regions. The effect is present for a broad variety of realistic antihole functions, and it is maximal at relatively low values of interpigment coupling ( V = 5 cm-1) where the use of the Förster approximation is justified. These findings need to be considered in interpreting various optical spectra of photosynthetic pigment-protein complexes for which SDFs (describing the inhomogeneous broadening) are often obtained directly from the ZPH action spectra. Water-soluble chlorophyll-binding protein (WSCP) was considered as an example.

PMID: 31265294 [PubMed - as supplied by publisher]





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