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MuscleMap: An Open-Source, Community-Supported Consortium for Whole-Body Quantitative MRI of Muscle

Author(s): McKay MJ; Weber KA; Wesselink EO; Smith ZA; Abbott R; Anderson DB; Ashton-James CE; Atyeo J; Beach AJ; Burns J; Clarke S; Collins NJ; Coppieters MW; Cornwall J; Crawford RJ; De Martino E; Dunn AG; Eyles JP; Feng HJ; Fortin M; Franettovic ...

Disorders affecting the neurological and musculoskeletal systems represent international health priorities. A significant impediment to progress in trials of new therapies is the absence of responsive, objective, and valid outcome measures sensitive to early disease changes. A key finding in indi ...

Article GUID: 39590726


Ion channel classification through machine learning and protein language model embeddings

Author(s): Ghazikhani H; Butler G;

Ion channels are critical membrane proteins that regulate ion flux across cellular membranes, influencing numerous biological functions. The resource-intensive nature of traditional wet lab experiments for ion channel identification has led to an increasing emphasis on computational techniques. This study extends our previous work on protein language mode ...

Article GUID: 39572876


A protocol for trustworthy EEG decoding with neural networks

Author(s): Borra D; Magosso E; Ravanelli M;

Deep learning solutions have rapidly emerged for EEG decoding, achieving state-of-the-art performance on a variety of decoding tasks. Despite their high performance, existing solutions do not fully address the challenge posed by the introduction of many hyperparameters, defining data pre-processing, network architecture, network training, and data augment ...

Article GUID: 39549492


Position-based visual servoing of a 6-RSS parallel robot using adaptive sliding mode control

Author(s): Zhu N; Xie WF; Shen H;

The trajectory tracking control of parallel robots is challenging due to their complicated dynamics and kinematics. This paper proposes a position-based visual servoing (PBVS) approach for a 6-Revolute-Spherical-Spherical (6-RSS) parallel robot using adaptive sliding mode control in Cartesian space. A photogrammetry sensor C-Track 780 in the eye-to-hand c ...

Article GUID: 39492316


Near-optimal learning of Banach-valued, high-dimensional functions via deep neural networks

Author(s): Adcock B; Brugiapaglia S; Dexter N; Moraga S;

The past decade has seen increasing interest in applying Deep Learning (DL) to Computational Science and Engineering (CSE). Driven by impressive results in applications such as computer vision, Uncertainty Quantification (UQ), genetics, simulations and image processing, DL is increasingly supplanting classical algorithms, and seems poised to revolutionize ...

Article GUID: 39454372


Deep neural network-based robotic visual servoing for satellite target tracking

Author(s): Ghiasvand S; Xie WF; Mohebbi A;

In response to the costly and error-prone manual satellite tracking on the International Space Station (ISS), this paper presents a deep neural network (DNN)-based robotic visual servoing solution to the automated tracking operation. This innovative approach directly addresses the critical issue of motion decoupling, which poses a significant challenge in ...

Article GUID: 39440297


Generalization limits of Graph Neural Networks in identity effects learning

Author(s): D' Inverno GA; Brugiapaglia S; Ravanelli M;

Graph Neural Networks (GNNs) have emerged as a powerful tool for data-driven learning on various graph domains. They are usually based on a message-passing mechanism and have gained increasing popularity for their intuitive formulation, which is closely linked to the Weisfeiler-Lehman (WL) test for graph isomorphism to which they have been proven equivale ...

Article GUID: 39426036


Modelling reindeer rut activity using on-animal acoustic recorders and machine learning

Author(s): Boucher AJ; Weladji RB; Holand Ø; Kumpula J;

For decades, researchers have employed sound to study the biology of wildlife, with the aim to better understand their ecology and behaviour. By utilizing on-animal recorders to capture audio from freely moving animals, scientists can decipher the vocalizations and glean insights into their behaviour and ecosystem dynamics through advanced signal processi ...

Article GUID: 38932958


The immunomodulatory effect of oral NaHCO3 is mediated by the splenic nerve: multivariate impact revealed by artificial neural networks

Author(s): Alvarez MR; Alkaissi H; Rieger AM; Esber GR; Acosta ME; Stephenson SI; Maurice AV; Valencia LMR; Roman CA; Alarcon JM;

Stimulation of the inflammatory reflex (IR) is a promising strategy for treating systemic inflammatory disorders. Recent studies suggest oral sodium bicarbonate (NaHCO3) as a potential activator of the IR, offering a safe and cost-effective treatment approach. However, the mechanisms underlying N ...

Article GUID: 38549144


Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks

Author(s): Ghazikhani H; Butler G;

Transmembrane transport proteins (transporters) play a crucial role in the fundamental cellular processes of all organisms by facilitating the transport of hydrophilic substrates across hydrophobic membranes. Despite the availability of numerous membrane protein sequences, their structures and functions remain largely elusive. Recently, natural language p ...

Article GUID: 37497772


Compatible-domain Transfer Learning for Breast Cancer Classification with Limited Annotated Data

Author(s): Shamshiri MA; Krzyzak A; Kowal M; Korbicz J;

Microscopic analysis of breast cancer images is the primary task in diagnosing cancer malignancy. Recent attempts to automate this task have employed deep learning models whose success has depended on large volumes of data, while acquiring annotated data in biomedical domains is time-consuming and may not always be feasible. A typical strategy to address ...

Article GUID: 36758326


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