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Title Authors PubMed ID
1 Mechanochemistry for Metal-Organic Frameworks and Covalent-Organic Frameworks (MOFs, COFs): Methods, Materials, and Mechanisms Marrett JM; Effaty F; Ottenwaelder X; Frišcic T; 40708349
CHEMBIOCHEM
2 Revealing the Freezing-Induced Alteration in Microplastic Behavior and Its Implication for the Microplastics Released from Seasonal Ice Chen Z; Elektorowicz M; An C; Tian X; Wang Z; Yang X; Lyu L; 39031076
ENCS
3 Surviving chlorinated waters: bleaching sensitivity and persistence of free-living amoebae Zahid MT; Mustafa G; Sajid R; Razzaq A; Waheed M; Khan MA; Hwang JH; Park YK; Chung WJ; Jeon BH; 39017868
ENCS
4 Who Should Decide How Machines Make Morally Laden Decisions? Dominic Martin 27905083
JMSB
5 Non-invasive paper-based sensors containing rare-earth-doped nanoparticles for the detection of D-glucose López-Peña G; Ortiz-Mansilla E; Arranz A; Bogdan N; Manso-Silván M; Martín Rodríguez E; 38729020
CHEMBIOCHEM
6 Spending Money in Free-to-Play Games: Sociodemographic Characteristics, Motives, Impulsivity and Internet Gaming Disorder Specificities Costes JM; Bonnaire C; 36497782
CONCORDIA
7 A Synthetic Biosensor for Detecting Putrescine in Beef Samples Selim AS; Perry JM; Nasr MA; Pimprikar JM; Shih SCC; 36356104
BIOLOGY
8 Cold region data accessibility portal for Québec (CRDAP-QC): An integrated, multi-variable and multi-scale data repository for studying cold-region hydrological processes in Québec Nazemi A; Jiwa S; Hatami S; 35637887
ENCS
9 Neural evidence for age-related deficits in the representation of state spaces Ruel A; Bolenz F; Li SC; Fischer A; Eppinger B; 35510942
PERFORM
10 A Proposed Multi-Criteria Optimization Approach to Enhance Clinical Outcomes Evaluation for Diabetes Care: A Commentary Wan TTH; Matthews S; Luh H; Zeng Y; Wang Z; Yang L; 35372638
ENCS
11 Structure-Based Virtual Screening Reveals Ibrutinib and Zanubrutinib as Potential Repurposed Drugs against COVID-19 Kaliamurthi S; Selvaraj G; Selvaraj C; Singh SK; Wei DQ; Peslherbe GH; 34209188
CHEMBIOCHEM
12 Late-spring frost risk between 1959 and 2017 decreased in North America but increased in Europe and Asia. Zohner CM, Mo L, Renner SS, Svenning JC, Vitasse Y, Benito BM, Ordonez A, Baumgarten F, Bastin JF, Sebald V, Reich PB, Liang J, Nabuurs GJ, de-Miguel S, Alberti G, Antón-Fernández C, Balazy R, Brändli UB, Chen HYH, Chisholm C, Cienciala E, Dayanandan S, Fayle TM, Frizzera L, Gianelle D, Jagodzinski AM, Jaroszewicz B, Jucker T, Kepfer-Rojas S, Khan ML, Kim HS, Korjus H, Johannsen VK, Laarmann D, Lang M, Zawila-Niedzwiecki T, Niklaus PA, Paquette A, Pretzsch H, Saikia P, Schall P, Šeben V, Svoboda M, Tikhonova E, Viana H, Zhang C, Zhao X, Crowther TW 32393624
BIOLOGY
13 Drude polarizable force field for cation-π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains Orabi EA; Davis RL; Lamoureux G; 31652004
CERMM
14 Metacontrol of decision-making strategies in human aging. Bolenz F, Kool W, Reiter AM, Eppinger B 31397670
PERFORM
15 Start-up of oxygen-limited autotrophic partial nitrification-anammox process for treatment of nitrite-free wastewater in a single-stage hybrid bioreactor. Hosseinpour B, Saborimanesh N, Yerushalmi L, Walsh D, Mulligan CN 31378146
CSFG
16 Differences in MEG and EEG power-law scaling explained by a coupling between spatial coherence and frequency: a simulation study. Bénar CG, Grova C, Jirsa VK, Lina JM 31292816
PERFORM
17 Proteomic Analysis of Morphologically Changed Tissues after Prolonged Dexamethasone Treatment Malkawi AK; Masood A; Shinwari Z; Jacob M; Benabdelkamel H; Matic G; Almuhanna F; Dasouki M; Alaiya AA; Rahman AMA; 31247941
CHEMBIOCHEM
18 Ideal despotic distributions in convict cichlids (Amatitlania nigrofasciata)? Effects of predation risk and personality on habitat preference. Church KDW, Grant JWA 30529688
BIOLOGY

 

Title:Drude polarizable force field for cation-π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains
Authors:Orabi EADavis RLLamoureux G
Link:https://pubmed.ncbi.nlm.nih.gov/31652004/
DOI:10.1002/jcc.26084
Publication:Journal of computational chemistry
Keywords:Cation-πinteractionsDrude polarizable force fieldab initio calculationsalkali metal ionsbinding free energyquaternary ammonium ions
PMID:31652004 Category:J Comput Chem Date Added:2019-10-28
Dept Affiliation: CERMM
1 Department of Chemistry, Faculty of Science, Assiut University, Assiut, 71516, Egypt.
2 Department of Chemistry, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada.
3 Department of Chemistry and Center for Computational and Integrative Biology (CCIB), Rutgers University, Camden, New Jersey, 08102.
4 Centre for Research in Molecular Modeling (CERMM), Concordia University, Montréal, Québec, H4B 1R6, Canada.

Description:

Cation-p interactions play important roles in molecular recognition and in the stability and function of proteins. However, accurate description of the structure and energetics of cation-p interactions presents a challenge to both additive and polarizable force fields, which are rarely designed to account for the complexation of charged groups with aromatic moieties. We calibrate the Drude polarizable force field for complexes of alkali metal ions (Li+ , Na+ , K+ , Rb+ , Cs+ ), ammonium (NH4+ ), tetramethylammonium (TMA+ ), and tetraethylammonium (TEA+ ) with aromatic amino acid side chain model compounds (benzene, toluene, 4-methylphenol, 3-methylindole) using high-level ab initio quantum chemical properties of these complexes. Molecular dynamics simulations reveal that cation-p complexes of the hard and tightly coordinated Li+ and Na+ ions are not stable in water but that larger ions form stable complexes, with binding free energies ranging between -0.8 and -2.9 kcal/mol. Like in gas phase, all complexes at equilibrium adopt an "en-face" complexation mode in water. The optimized Drude polarizable model provides an accurate description of the cation-p interactions involving small ions and proteins. © 2019 Wiley Periodicals, Inc.





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