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PubMed Publications| Keyword search (4,163 papers available) |  |
"data sharing" Keyword-tagged Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Introduction to the shared near infrared spectroscopy format | Tucker S; Dubb J; Kura S; von Lühmann A; Franke R; Horschig JM; Powell S; Oostenveld R; Lührs M; Delaire É; Aghajan ZM; Yun H; Yücel MA; Fang Q; Huppert TJ; Frederick BB; Pollonini L; Boas D; Luke R; | 36507152 ENCS |
| 2 | Toward a digital citizen lab for capturing data about alternative ways of self-managing chronic pain: An attitudinal user study | Khalili-Mahani N; Woods S; Holowka EM; Pahayahay A; Roy M; | 36188996 PERFORM |
| 3 | Cyberinfrastructure for Open Science at the Montreal Neurological Institute. | Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC | 28111547 IMAGING |
| 4 | Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. | Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA | 30702898 BIOLOGY |
| Title: | Introduction to the shared near infrared spectroscopy format | ||||
| Authors: | Tucker S, Dubb J, Kura S, von Lühmann A, Franke R, Horschig JM, Powell S, Oostenveld R, Lührs M, Delaire É, Aghajan ZM, Yun H, Yücel MA, Fang Q, Huppert TJ, Frederick BB, Pollonini L, Boas D, Luke R | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/36507152/ | ||||
| DOI: | 10.1117/1.NPh.10.1.013507 | ||||
| Publication: | Neurophotonics | ||||
| Keywords: | data format; data sharing; functional near-infrared spectroscopy; shared near-infrared spectroscopy format; software; standardization; | ||||
| PMID: | 36507152 | Category: | Date Added: | 2022-12-12 | |
| Dept Affiliation: |
ENCS
1 Boston University, Neurophotonics Center, Department of Biomedical Engineering, Boston, Massachusetts, United States. 2 NIRx Medical Technologies, Berlin, Germany. 3 Artinis Medical Systems B.V., Elst, The Netherlands. 4 Gowerlabs, London, United Kingdom. 5 University of Nottingham, Nottingham, United Kingdom. 6 University College London, London, United Kingdom. 7 Radboud University, Donders Institute for Brain, Cognition and Behaviour, Nijmegen, The Netherlands. 8 Karolinska Institutet, NatMEG, Stockholm, Sweden. 9 Maastricht University, Maastricht, The Netherlands. 10 Brain Innovation B.V., Maastricht, The Netherlands. 11 Concordia University, Montreal, Quebec, Canada. 12 Kernel, Los Angeles, California, United States. 13 OBELAB, Seoul, Republic |
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Description: |
Significance: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the adoption and development of software tools. Aim: We endeavored to design a file format to facilitate the analysis and sharing of fNIRS data that is flexible enough to meet the community's needs and sufficiently defined to be implemented consistently across various hardware and software platforms. Approach: The shared NIRS format (SNIRF) specification was developed in consultation with the academic and commercial fNIRS community and the Society for functional Near Infrared Spectroscopy. Results: The SNIRF specification defines a format for fNIRS data acquired using continuous wave, frequency domain, time domain, and diffuse correlation spectroscopy devices. Conclusions: We present the SNIRF along with validation software and example datasets. Support for reading and writing SNIRF data has been implemented by major hardware and software platforms, and the format has found widespread use in the fNIRS community. |
