Keyword search (4,163 papers available)

"Simulation" Keyword-tagged Publications:

Title Authors PubMed ID
1 Laboratory-scale simulation study on the bioremediation of marine oil pollution by phosphate-solubilizing bacteria Bacillus subtilis PSB-1 Du Z; Li Z; Chen X; Liu M; Feng L; Li Q; Chen Z; Chen Q; 41707285
ENCS
2 Assessment of risk for aromatic hydrocarbons resulting from subsea Blowouts: A case study in eastern Canada Yang Z; Chen Z; Xin Q; Lee K; 39571296
ENCS
3 In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin Fatoki TH; Balogun TC; Ojewuyi AE; Omole AC; Olukayode OV; Adewumi AP; Umesi AJ; Ijeoma NP; Apooyin AE; Chinedu CP; Idowu IE; Isah MJ; 39439008
CHEMBIOCHEM
4 What can optimized cost distances based on genetic distances offer? A simulation study on the use and misuse of ResistanceGA Daniel A; Savary P; FoltĂȘte JC; Vuidel G; Faivre B; Garnier S; Khimoun A; 39417711
BIOLOGY
5 Numerical Simulation of the Effect of Particle and Substrate Preheating on Porosity Level and Residual Stress of As-sprayed Ti6Al4V Components Khamsepour P; Moreau C; Dolatabadi A; 38624932
ENCS
6 In Silico Study of the Early Stages of Aggregation of β-Sheet Forming Antimicrobial Peptide GL13K Hamidabad MN; Watson NA; Wright LN; Mansbach RA; 38572930
PHYSICS
7 Insights into dietary phytochemicals targeting Parkinson's disease key genes and pathways: A network pharmacology approach Sasikumar DSN; Thiruselvam P; Sundararajan V; Ravindran R; Gunasekaran S; Madathil D; Kaliamurthi S; Peslherbe GH; Selvaraj G; Sudhakaran SL; 38460310
CHEMBIOCHEM
8 Design Optimization of a Hybrid-Driven Soft Surgical Robot with Biomimetic Constraints Roshanfar M; Dargahi J; Hooshiar A; 38275456
ENCS
9 Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak Jin Y; Fayyaz A; Liaqat A; Khan A; Alshammari A; Wang Y; Gu RX; Wei DQ; 37116237
CONCORDIA
10 Evaluating Emotional Outcomes of Medical Students in Pediatric Emergency Medicine Telesimulation Nomura O; Sunohara M; Watanabe I; Itoh T; 36670719
PSYCHOLOGY
11 Energy, economic, and environmental impacts of enhanced ventilation strategies on railway coaches to reduce Covid-19 contagion risks Barone G; Buonomano A; Forzano C; Giuzio GF; Palombo A; 35754761
ENCS
12 Teaching Culturally Safe Care in Simulated Cultural Communication Scenarios During the COVID-19 Pandemic: Virtual Visits with Indigenous Animators Maar M; McGregor L; Desjardins D; Delaney KZ; Bessette N; Reade M; 35392591
HKAP
13 A Proposed Multi-Criteria Optimization Approach to Enhance Clinical Outcomes Evaluation for Diabetes Care: A Commentary Wan TTH; Matthews S; Luh H; Zeng Y; Wang Z; Yang L; 35372638
ENCS
14 Insights from a dyslexia simulation font: Can we simulate reading struggles of individuals with dyslexia? Stark Z; Franzen L; Johnson AP; 34854169
PSYCHOLOGY
15 A Simulation Toolkit for Testing the Sensitivity and Accuracy of Corticometry Pipelines OmidYeganeh M; Khalili-Mahani N; Bermudez P; Ross A; Lepage C; Vincent RD; Jeon S; Lewis LB; Das S; Zijdenbos AP; Rioux P; Adalat R; Van Eede MC; Evans AC; 34381348
PERFORM
16 Mitigating COVID-19 infection disease transmission in indoor environment using physical barriers Ren C; Xi C; Wang J; Feng Z; Nasiri F; Cao SJ; Haghighat F; 34306996
ENCS
17 Numerical assessment of directional energy performance for 3D printed midsole structures Sultana A; Kwok TH; Hsu CC; Ng HD; 34198446
ENCS
18 Structure-Based Virtual Screening Reveals Ibrutinib and Zanubrutinib as Potential Repurposed Drugs against COVID-19 Kaliamurthi S; Selvaraj G; Selvaraj C; Singh SK; Wei DQ; Peslherbe GH; 34209188
CHEMBIOCHEM
19 Exploring the Role of Glycans in the Interaction of SARS-CoV-2 RBD and Human Receptor ACE2 Nguyen K; Chakraborty S; Mansbach RA; Korber B; Gnanakaran S; 34067878
PHYSICS
20 Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms Masoumi N; Belasso CJ; Ahmad MO; Benali H; Xiao Y; Rivaz H; 33683544
PERFORM
21 Using Models to (Re-)Design Synthetic Circuits. McCallum G, Potvin-Trottier L 33405217
BIOLOGY
22 Simulation and computer modeling of asphaltene in different solvents on oil-water interfaces using a molecular dynamic methodology. Yuan J, Elektorowicz M, Chen Z, Segun GA, Vakili M, Zhong L, Wang B, Zhu J, Wu Y 31542686
ENCS
23 Simulations and error analysis of the CNC milling of a face gear tooth with given tool paths. Yi H, Zhou Y, Tang J, Chen ZC 31297425
ENCS

 

Title:In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin
Authors:Fatoki THBalogun TCOjewuyi AEOmole ACOlukayode OVAdewumi APUmesi AJIjeoma NPApooyin AEChinedu CPIdowu IEIsah MJ
Link:https://pubmed.ncbi.nlm.nih.gov/39439008/
DOI:10.1186/s40360-024-00804-z
Publication:BMC pharmacology & toxicology
Keywords:AntibioticMolecular dynamics simulationMolecular targetOritavancinPBPK modelingPharmacokinetics
PMID:39439008 Category: Date Added:2024-10-23
Dept Affiliation: CHEMBIOCHEM
1 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria. toluwase.fatoki@fuoye.edu.ng.
2 Department of Chemistry and Biochemistry, Concordia University, Montreal, QC, H4B 1R6, Canada. toluwase.fatoki@fuoye.edu.ng.
3 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria.

Description:

Introduction: Oritavancin is a semi-synthetic lipoglycopeptide antibiotic primarily used to treat serious infections caused by Gram-positive bacteria. The aim of this study was to elucidate possible molecular targets of oritavancin in human and microbes in relevance to its mechanism of action and model its pharmacokinetics for optimal dose selection in clinical practice.

Methods: Computational methods were used in this study which include target prediction, molecular docking, molecular dynamics simulation, pharmacokinetics prediction, and physiological-based pharmacokinetics (PBPK) modeling.

Results: Oritavancin was moderately soluble in water and did not permeate the blood-brain barrier. Seven molecular targets were identified in humans. Molecular docking results showed highest binding affinity of oritavancin with PI3-kinase p110-gamma subunit (-10.34 kcal/mol), followed by Acyl-CoA desaturase (-10.07 kcal/mol) and Cytochrome P450 2C19 (-8.384 kcal/mol). Oritavancin PBPK modelling in adult human showed that infusion has lower peak concentrations (Cmax) compared to bolus administration, with 1200 mg dose yielded Cmax of 16.559 mg/L, 800 mg dose yielded Cmax of 11.258 mg/L, and 200 mg over 3 days dose yielded Cmax of 7.526 mg/L. Notably, infusion gave extended half-life (t1/2) for all doses and slightly higher clearance rates compared to bolus, particularly for the 1200 mg and 800 mg doses. The results corroborated existing clinical pharmacokinetic data, and confirmed the model's accuracy and predictive capability.

Conclusion: This comprehensive computational study has provided invaluable insights into the pharmacological profile of Oritavancin, aiding its further development and optimization for clinical use.





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