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PubMed Publications| Keyword search (4,163 papers available) |  |
"Neuroscience" Keyword-tagged Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Biotuner: A python toolbox integrating music theory and signal processing for harmonic analysis of physiological and natural time series | Bellemare-Pepin A; Jerbi K; | 41269470 PSYCHOLOGY |
| 2 | Syngap1 regulates the synaptic drive and membrane excitability of Parvalbumin-positive interneurons in mouse auditory cortex | Francavilla R; Chattopadhyaya B; Damo Kamda JL; Jadhav V; Kourrich S; Michaud JL; Di Cristo G; | 40810392 CSBN |
| 3 | Personalizing brain stimulation: continual learning for sleep spindle detection | Sobral M; Jourde HR; Marjani Bajestani SE; Coffey EBJ; Beltrame G; | 40609549 PSYCHOLOGY |
| 4 | Integrating past experiences | Leir TMW; Gardner MPH; | 40146623 PSYCHOLOGY |
| 5 | SEC24C deficiency causes trafficking and glycosylation abnormalities in an epileptic encephalopathy with cataracts and dyserythropoeisis | Bögershausen N; Cavdarli B; Nagai T; Milev MP; Wolff A; Mehranfar M; Schmidt J; Choudhary D; Gutiérrez-Gutiérrez Ó; Cyganek L; Saint-Dic D; Zibat A; Köhrer K; Wollenweber TE; Wieczorek D; Altmüller J; Borodina T; Kaçar D; Haliloglu G; Li Y; Thiel C; Sacher M; Knapik EW; Yigit G; Wollnik B; | 40131364 BIOLOGY |
| 6 | Protocol for evaluating neuronal activity and neurotransmitter release following amyloid-beta oligomer injections into the rat hippocampus | Hervé V; Bonenfant L; Amyot M; Balafrej R; Ali OBK; Benali H; Brouillette J; | 40131934 ENCS |
| 7 | Toward cognitive models of misophonia | Savard MA; Coffey EBJ; | 39874936 PSYCHOLOGY |
| 8 | Evoked and entrained pupillary activity while moving to preferred tempo and beyond | Spiech C; Hope M; Bégel V; | 39758823 PSYCHOLOGY |
| 9 | Computational neuroscience across the lifespan: Promises and pitfalls | van den Bos W; Bruckner R; Nassar MR; Mata R; Eppinger B; | 29066078 PSYCHOLOGY |
| 10 | Overcoming boundaries: Interdisciplinary challenges and opportunities in cognitive neuroscience | Brignol A; Paas A; Sotelo-Castro L; St-Onge D; Beltrame G; Coffey EBJ; | 38750788 PSYCHOLOGY |
| 11 | Parvalbumin interneuron loss mediates repeated anesthesia-induced memory deficits in mice | Roque PS; Thörn Perez C; Hooshmandi M; Wong C; Eslamizade MJ; Heshmati S; Brown N; Sharma V; Lister KC; Goyon VM; Neagu-Lund L; Shen C; Daccache N; Sato H; Sato T; Mogil JS; Nader K; Gkogkas CG; Iordanova MD; Prager-Khoutorsky M; McBride HM; Lacaille JC; Wykes L; Schricker T; Khoutorsky A; | 36394958 PSYCHOLOGY |
| 12 | Processing visual ambiguity in fractal patterns: Pareidolia as a sign of creativity | Pepin AB; Harel Y; O' Byrne J; Mageau G; Dietrich A; Jerbi K; | 36164655 PSYCHOLOGY |
| 13 | Sigma oscillations protect or reinstate motor memory depending on their temporal coordination with slow waves | Nicolas J; King BR; Levesque D; Lazzouni L; Coffey EBJ; Swinnen S; Doyon J; Carrier J; Albouy G; | 35726850 PSYCHOLOGY |
| 14 | The Convergence Model of Brain Reward Circuitry: Implications for Relief of Treatment-Resistant Depression by Deep-Brain Stimulation of the Medial Forebrain Bundle | Pallikaras V; Shizgal P; | 35431828 PSYCHOLOGY |
| 15 | The Algorithms of Mindfulness | Johannes Bruder | 35103028 CONCORDIA |
| 16 | Comment on the article "Spatially-extended nucleation-aggregation-fragmentation models for the dynamics of prion-like neurodegenerative protein-spreading in the brain and its connectome 486 (2020) 110102" | Arsalan Rahimabadi | 34843739 PERFORM |
| 17 | The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging | Paquola C; Royer J; Lewis LB; Lepage C; Glatard T; Wagstyl K; DeKraker J; Toussaint PJ; Valk SL; Collins DL; Khan A; Amunts K; Evans AC; Dickscheid T; Bernhardt BC; | 34431476 IMAGING |
| 18 | All-optical approaches to studying psychiatric disease | Lafferty CK; Christinck TD; Britt JP; | 34314828 CSBN |
| 19 | Meta-control: From psychology to computational neuroscience | Eppinger B; Goschke T; Musslick S; | 34081267 PSYCHOLOGY |
| 20 | Different methods of fear reduction are supported by distinct cortical substrates. | Lay BP, Pitaru AA, Boulianne N, Esber GR, Iordanova MD | 32589138 PSYCHOLOGY |
| 21 | The Neuroscience of Sadness: A Multidisciplinary Synthesis and Collaborative Review for the Human Affectome Project. | Arias JA, Williams C, Raghvani R, Aghajani M, Baez S, Belzung C, Booij L, Busatto G, Chiarella J, Fu CH, Ibanez A, Liddell BJ, Lowe L, Penninx BWJH, Rosa P, Kemp AH | 32001274 PSYCHOLOGY |
| 22 | Metacontrol of decision-making strategies in human aging. | Bolenz F, Kool W, Reiter AM, Eppinger B | 31397670 PERFORM |
| 23 | Cyberinfrastructure for Open Science at the Montreal Neurological Institute. | Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC | 28111547 IMAGING |
| 24 | Developmental Changes in Learning: Computational Mechanisms and Social Influences. | Bolenz F, Reiter AMF, Eppinger B | 29250006 PERFORM |
| 25 | Consolidation alters motor sequence-specific distributed representations. | Pinsard B, Boutin A, Gabitov E, Lungu O, Benali H, Doyon J | 30882348 PERFORM |
| Title: | Biotuner: A python toolbox integrating music theory and signal processing for harmonic analysis of physiological and natural time series | ||||
| Authors: | Bellemare-Pepin A, Jerbi K | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/41269470/ | ||||
| DOI: | 10.1186/s40708-025-00270-1 | ||||
| Publication: | Brain informatics | ||||
| Keywords: | Biosignal analysis; EEG; Harmonicity; Music theory; Neuroscience; Signal processing; | ||||
| PMID: | 41269470 | Category: | Date Added: | 2025-11-21 | |
| Dept Affiliation: |
PSYCHOLOGY
1 CoCo Lab, Department of Psychology, Université de Montréal, Montreal, QC, Canada. antoine.bellemare9@gmail.com. 2 Music department, Concordia University, Montreal, QC, Canada. antoine.bellemare9@gmail.com. 3 CoCo Lab, Department of Psychology, Université de Montréal, Montreal, QC, Canada. 4 Mila (Quebec AI research Institute), Montreal, QC, Canada. 5 UNIQUE Center (Quebec Neuro-AI research Center), Montreal, QC, Canada. |
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Description: |
Background: The Biotuner Toolbox is an open-source Python toolbox for biosignals that integrates concepts from neuroscience, music theory, and signal processing. It introduces a harmonic perspective on physiological oscillations by applying musical constructs such as consonance, rhythm, and scale construction. Methods: The core biotuner_object processes neural, cardiac, and auditory time series, providing a unified interface for extracting spectral peaks, computing harmonicity metrics, and supporting downstream analyses. Companion modules extend harmonic analyses across temporal (time-resolved harmonicity), spatial (harmonic connectivity), and spectral (harmonic spectrum) dimensions. Results: Biotuner identifies harmonic structure across different biosignals, revealing significant variations in harmonicity between physiological states. Specifically, the toolbox extracts spectral peaks from complex signals using multiple algorithms, ensuring robust peak detection under varying signal-to-noise ratios. Moreover, we show how harmonicity metrics change across distinct sleep stages and capture variations in the slopes of the aperiodic (1/f) component of the power spectrum. Conclusion: Biotuner provides an extensible framework that unifies music-theoretic constructs with biosignal processing, enabling hypothesis-driven analyses for researchers and, in parallel, creative exploration of complex natural patterns for artists. |
