| Keyword search (4,163 papers available) | ![]() |
"Genome sequencing" Keyword-tagged Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Sequencing of a Dairy Isolate Unlocks em Kluyveromyces marxianus /em as a Host for Lactose Valorization | Thornbury M; Knoops A; Summerby-Murray I; Dhaliwal J; Johnson S; Utomo JC; Joshi J; Narcross L; Remondetto G; Pouliot M; Whiteway M; Martin VJJ; | 40629255 BIOLOGY |
| 2 | Widespread admixture blurs population structure and confounds Lake Trout (Salvelinus namaycush) conservation even in the genomic era | Bernos TA; Gibelli J; Michaelides S; Won H; Jeon HB; Marin K; Boguski DA; Janjua MY; Gallagher CP; Howland KL; Fraser DJ; | 39730611 BIOLOGY |
| 3 | Development of SNP Panels from Low-Coverage Whole Genome Sequencing (lcWGS) to Support Indigenous Fisheries for Three Salmonid Species in Northern Canada | Beemelmanns A; Bouchard R; Michaelides S; Normandeau E; Jeon HB; Chamlian B; Babin C; Hénault P; Perrot O; Harris LN; Zhu X; Fraser D; Bernatchez L; Moore JS; | 39552382 BIOLOGY |
| 4 | Genome and secretome insights: unravelling the lignocellulolytic potential of Myceliophthora verrucosa for enhanced hydrolysis of lignocellulosic biomass | Sharma G; Kaur B; Singh V; Raheja Y; Falco MD; Tsang A; Chadha BS; | 38676717 CSFG |
| 5 | Community-led risk analysis of direct-to-consumer whole-genome sequencing | Samlali K; Thornbury M; Venter A; | 35939839 ENCS |
| 6 | Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing | Brookes B; Jeon HB; Derry AM; Post JR; Rogers SM; Humphries S; Fraser DJ; | 35154655 BIOLOGY |
| 7 | Genetic Characterization of Mutations Related to Conidiophore Stalk Length Development in Aspergillus niger Laboratory Strain N402 | Demirci E; Arentshorst M; Yilmaz B; Swinkels A; Reid ID; Visser J; Tsang A; Ram AFJ; | 33959152 CSFG |
| 8 | Genome Sequence Resource of Bacillus velezensis EB14, a native endophytic bacterial strain with biocontrol potential against the poplar stem canker causative pathogen, Sphaerulina musiva. | Naik S, Tsang A, Ramanan US, Dayanandan S | 33263425 BIOLOGY |
| 9 | Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans. | Bastos RW, Valero C, Silva LP, Schoen T, Drott M, Brauer V, Silva-Rocha R, Lind A, Steenwyk JL, Rokas A, Rodrigues F, Resendiz-Sharpe A, Lagrou K, Marcet-Houben M, Gabaldón T, McDonnell E, Reid I, Tsang A, Oakley BR, Loures FV, Almeida F, Huttenlocher A, Keller NP, Ries LNA, Goldman GH | 32269156 CSFG |
| Title: | Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing | ||||
| Authors: | Brookes B, Jeon HB, Derry AM, Post JR, Rogers SM, Humphries S, Fraser DJ | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/35154655/ | ||||
| DOI: | 10.1002/ece3.8584 | ||||
| Publication: | Ecology and evolution | ||||
| Keywords: | Salvelinus fontinalis; adaptive differentiation; genetic diversity; introduced species; neutral diversity; whole-genome sequencing; | ||||
| PMID: | 35154655 | Category: | Date Added: | 2022-02-14 | |
| Dept Affiliation: |
BIOLOGY
1 Department of Biology Concordia University Montréal QC Canada. 2 Département des sciences biologiques Université du Québec à Montréal Montréal QC Canada. 3 Department of Biology University of Calgary Calgary AB Canada. 4 Parks Canada Natural Resource Management Branch Radium Hot Springs BC Canada. |
||||
Description: |
Understanding the drivers of successful species invasions is important for conserving native biodiversity and for mitigating the economic impacts of introduced species. However, whole-genome resolution investigations of the underlying contributions of neutral and adaptive genetic variation in successful introductions are rare. Increased propagule pressure should result in greater neutral genetic variation, while environmental differences should elicit selective pressures on introduced populations, leading to adaptive differentiation. We investigated neutral and adaptive variation among nine introduced brook trout (Salvelinus fontinalis) populations using whole-genome pooled sequencing. The populations inhabit isolated alpine lakes in western Canada and descend from a common source, with an average of ~19 (range of 7-41) generations since introduction. We found some evidence of bottlenecks without recovery, no strong evidence of purifying selection, and little support that varying propagule pressure or differences in local environments shaped observed neutral genetic variation differences. Putative adaptive loci analysis revealed nonconvergent patterns of adaptive differentiation among lakes with minimal putatively adaptive loci (0.001%-0.15%) that did not correspond with tested environmental variables. Our results suggest that (i) introduction success is not always strongly influenced by genetic load; (ii) observed differentiation among introduced populations can be idiosyncratic, population-specific, or stochastic; and (iii) conservatively, in some introduced species, colonization barriers may be overcome by support through one aspect of propagule pressure or benign environmental conditions. |



