Keyword search (4,163 papers available)

"Dataset" Keyword-tagged Publications:

Title Authors PubMed ID
1 ADPv2: A hierarchical histological tissue type-annotated dataset for potential biomarker discovery of colorectal disease Yang Z; Li K; Ramandi SG; Brassard P; Khellaf A; Trinh VQ; Zhang J; Chen L; Rowsell C; Varma S; Plataniotis K; Hosseini MS; 41658283
ENCS
2 CACTUS: An open dataset and framework for automated Cardiac Assessment and Classification of Ultrasound images using deep transfer learning Elmekki H; Alagha A; Sami H; Spilkin A; Zanuttini AM; Zakeri E; Bentahar J; Kadem L; Xie WF; Pibarot P; Mizouni R; Otrok H; Singh S; Mourad A; 40107020
ENCS
3 MuscleMap: An Open-Source, Community-Supported Consortium for Whole-Body Quantitative MRI of Muscle McKay MJ; Weber KA; Wesselink EO; Smith ZA; Abbott R; Anderson DB; Ashton-James CE; Atyeo J; Beach AJ; Burns J; Clarke S; Collins NJ; Coppieters MW; Cornwall J; Crawford RJ; De Martino E; Dunn AG; Eyles JP; Feng HJ; Fortin M; Franettovich Smith MM; Galloway G; Gandomkar Z; Glastras S; Henderson LA; Hides JA; Hiller CE; Hilmer SN; Hoggarth MA; Kim B; Lal N; LaPorta L; Magnussen JS; Maloney S; March L; Nackley AG; O' Leary SP; Peolsson A; Perraton Z; Pool-Goudzwaard AL; Schnitzler M; Seitz AL; Semciw AI; Sheard PW; Smith AC; Snodgrass SJ; Sullivan J; Tran V; Valentin S; Walton DM; Wishart LR; Elliott JM; 39590726
HKAP
4 CosSIF: Cosine similarity-based image filtering to overcome low inter-class variation in synthetic medical image datasets Islam M; Zunair H; Mohammed N; 38492455
ENCS
5 Firefly (Coleoptera, Lampyridae) species from the Atlantic Forest hotspot, Brazil Vaz S; Mendes M; Khattar G; Macedo M; Ronquillo C; Zarzo-Arias A; Hortal J; Silveira L; 38327309
CONCORDIA
6 Analysis of input set characteristics and variances on k-fold cross validation for a Recurrent Neural Network model on waste disposal rate estimation Vu HL; Ng KTW; Richter A; An C; 35287077
ENCS
7 Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms Masoumi N; Belasso CJ; Ahmad MO; Benali H; Xiao Y; Rivaz H; 33683544
PERFORM
8 Augmented reality mastectomy surgical planning prototype using the HoloLens template for healthcare technology letters. Amini S, Kersten-Oertel M 32038868
PERFORM

 

Title:Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms
Authors:Masoumi NBelasso CJAhmad MOBenali HXiao YRivaz H
Link:https://pubmed.ncbi.nlm.nih.gov/33683544/
DOI:10.1007/s11548-021-02323-2
Publication:International journal of computer assisted radiology and surgery
Keywords:DatasetImage registrationUltrasound simulationVertebrae
PMID:33683544 Category: Date Added:2021-03-08
Dept Affiliation: PERFORM
1 PERFORM Centre, Concordia University, Montreal, Canada. n_masoum@encs.concordia.ca.
2 Department of Electrical and Computer Engineering, Concordia University, Montreal, Canada. n_masoum@encs.concordia.ca.
3 Department of Electrical and Computer Engineering, Concordia University, Montreal, Canada.
4 PERFORM Centre, Concordia University, Montreal, Canada.

Description:

Purpose: Accurate multimodal registration of intraoperative ultrasound (US) and preoperative computed tomography (CT) is a challenging problem. Construction of public datasets of US and CT images can accelerate the development of such image registration techniques. This can help ensure the accuracy and safety of spinal surgeries using image-guided surgery systems where an image registration is employed. In addition, we present two algorithms to register US and CT images.

Methods: We present three different datasets of vertebrae with corresponding CT, US, and simulated US images. For each of the two latter datasets, we also provide 16 landmark pairs of matching structures between the CT and US images and performed fiducial registration to acquire a silver standard for assessing image registration. Besides, we proposed two patch-based rigid image registration algorithms, one based on normalized cross-correlation (NCC) and the other based on correlation ratio (CR) to register misaligned CT and US images.

Results: The CT and corresponding US images of the proposed database were pre-processed and misaligned with different error intervals, resulting in 6000 registration problems solved using both NCC and CR methods. Our results show that the methods were successful in aligning the pre-processed CT and US images by decreasing the warping index.

Conclusions: The database provides a resource for evaluating image registration techniques. The simulated data have two applications. First, they provide the gold standard ground-truth which is difficult to obtain with ex vivo and in vivo data for validating US-CT registration methods. Second, the simulated US images can be used to validate real-time US simulation methods. Besides, the proposed image registration techniques can be useful for developing methods in clinical application.





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