PERFORM Publications

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Title		Authors	PubMed ID
1	Mechanochemistry for Metal-Organic Frameworks and Covalent-Organic Frameworks (MOFs, COFs): Methods, Materials, and Mechanisms	Marrett JM; Effaty F; Ottenwaelder X; Frišcic T;	40708349 CHEMBIOCHEM
2	Sustainable Recovery of Critical Minerals from Wastes by Green Biosurfactants: A Review	Deravian B; Mulligan CN;	40509347 ENCS
3	Comprehensive Analysis of Age- and Sex-Related Expression of the Chaperone Protein Sigma-1R in the Mouse Brain	Tarmoun K; Lachance V; Le Corvec V; Bélanger SM; Beaucaire G; Kourrich S;	39335377 CSBN
4	Mechanochemical Synthesis of Boroxine-linked Covalent Organic Frameworks	Hamzehpoor E; Effaty F; Borchers TH; Stein RS; Wahrhaftig-Lewis A; Ottenwaelder X; Frišcic T; Perepichka DF;	38970305 CHEMBIOCHEM
5	Molecular copper(I)-sensitized photoanodes for alcohol oxidation under ambient conditions	Ricardo-Noordberg J; Kamal S; Majewski M;	38932662 CHEMBIOCHEM
6	Design, Synthesis, and Acid-Responsive Disassembly of Shell-Sheddable Block Copolymer Labeled with Benzaldehyde Acetal Junction	Andrade-Gagnon B; Casillas-Popova SN; Jazani AM; Oh JK;	38499007 CHEMBIOCHEM
7	Using 13C enriched acetate in isotope labelling incubation experiments: a note of caution	Leone F; Imfeld A; Mirzaei Y; Gélinas Y;	38097918 CHEMBIOCHEM
8	An electrochemical aptasensor for Δ9-tetrahydrocannabinol detection in saliva on a microfluidic platform	Kékedy-Nagy L; Perry JM; Little SR; Llorens OY; Shih SCC;	36549107 BIOLOGY
9	Droplet digital microfluidic system for screening filamentous fungi based on enzymatic activity	Samlali K; Alves CL; Jezernik M; Shih SCC;	36438986 BIOLOGY
10	On the Origin of Sugar Handedness: Facts, Hypotheses and Missing Links-A Review	Martínez RF; Cuccia LA; Viedma C; Cintas P;	35796896 CHEMBIOCHEM
11	Diverse Applications of Biomass-Derived 5-Hydroxymethylfurfural and Derivatives as Renewable Starting Materials	Chacón-Huete F; Messina C; Cigana B; Forgione P;	35652539 CHEMBIOCHEM
12	Electrochemical nutrient removal from natural wastewater sources and its impact on water quality	Kékedy-Nagy L; English L; Anari Z; Abolhassani M; Pollet BG; Popp J; Greenlee LF;	34974342 CSFG
13	Self-Healable Reprocessable Triboelectric Nanogenerators Fabricated with Vitrimeric Poly(hindered Urea) Networks.	Patel T, Kim MP, Park J, Lee TH, Nellepalli P, Noh SM, Jung HW, Ko H, Oh JK	32840992 CHEMBIOCHEM
14	Modular Construction of Porous Hydrogen-Bonded Molecular Materials from Melams.	Khadivjam T, Che-Quang H, Maris T, Ajoyan Z, Howarth A, Wuest JD	32115786 CONCORDIA
15	How does synchrony with host plant affect the performance of an outbreaking insect defoliator?	Fuentealba A, Pureswaran D, Bauce É, Despland E	28756489 BIOLOGY
16	Reduction-Responsive Sheddable Carbon Nanotubes Dispersed in Aqueous Solution.	An SY, Sun S, Oh JK	26890479 CNSR
17	Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.	Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA	30702898 BIOLOGY
18	Biomarkers, designs, and interpretations of resting-state fMRI in translational pharmacological research: A review of state-of-the-Art, challenges, and opportunities for studying brain chemistry.	Khalili-Mahani N, Rombouts SA, van Osch MJ, Duff EP, Carbonell F, Nickerson LD, Becerra L, Dahan A, Evans AC, Soucy JP, Wise R, Zijdenbos AP, van Gerven JM	28145075 PERFORM

Title:	Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Authors:	Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA
Link:	https://www.ncbi.nlm.nih.gov/pubmed/30702898?dopt=Abstract
DOI:	10.1021/acs.jproteome.8b00761
Publication:	Journal of proteome research
Keywords:	Metaproteomics; best practices; biogeochemistry; data sharing; ocean;
PMID:	30702898	Category:	J Proteome Res	Date Added:	2019-06-07
Dept Affiliation:	BIOLOGY 1 Woods Hole Oceanographic Institution , Woods Hole , Massachusetts 02543 , United States. 2 Department of Biology , Dalhousie University , Halifax , Nova Scotia B3H 4R2 , Canada. 3 School of Oceanography , University of Washington , Seattle , Washington 98195-7940 , United States. 4 U.S. Naval Research Laboratory , Washington , D.C. 20375 , United States. 5 Oak Ridge National Laboratory and Microbiology Department , University of Tennessee , Knoxville , Tennessee 37996 , United States. 6 Department of Biochemistry, Molecular Biology and Biophysics , University of Minnesota , Saint Paul , Minnesota 55108 , United States. 7 College of Charleston , Charleston , South Carolina 29424 , United States. 8 Department of Environmental Science , Rowan University , Glassboro , New Jersey 08028 , United States. 9 National Institute of Standards and Technology , Charleston , South Carolina 29412 , United States. 10 Department of Genome Sciences , University of Washington , Seattle , Washington 98195 , United States. 11 Department of Biology , Concordia University , Montreal , Quebec H4B 1R6 , Canada.

Description:

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

J Proteome Res. 2019 Apr 05;18(4):1461-1476

Authors: Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA

Abstract

Ocean metaproteomics is an emerging field enabling discoveries about marine microbial communities and their impact on global biogeochemical processes. Recent ocean metaproteomic studies have provided insight into microbial nutrient transport, colimitation of carbon fixation, the metabolism of microbial biofilms, and dynamics of carbon flux in marine ecosystems. Future methodological developments could provide new capabilities such as characterizing long-term ecosystem changes, biogeochemical reaction rates, and in situ stoichiometries. Yet challenges remain for ocean metaproteomics due to the great biological diversity that produces highly complex mass spectra, as well as the difficulty in obtaining and working with environmental samples. This review summarizes the progress and challenges facing ocean metaproteomic scientists and proposes best practices for data sharing of ocean metaproteomic data sets, including the data types and metadata needed to enable intercomparisons of protein distributions and annotations that could foster global ocean metaproteomic capabilities.

PMID: 30702898 [PubMed - in process]

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