PERFORM Publications

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Title		Authors	PubMed ID
1	Structural Behavior and Fatigue of FRP-Reinforced Concrete Beams Exposed to Different Weathering Conditions	Rahmatian A; Saleem H; Hejazi F; Nokken M; Bagchi A;	41828174 ENCS
2	Navigating the nexus: climate dynamics and microplastics pollution in coastal ecosystems	Ahmed Dar A; Chen Z; Sardar MF; An C;	38642636 ENCS
3	A multiyear time series (2004-2012) of bacterial and archaeal community dynamics in a changing Arctic Ocean	Kraemer SA; Ramachandran A; Onana VE; Li WKW; Walsh DA;	38282643 BIOLOGY
4	New Megastigmane and Polyphenolic Components of Henna Leaves and Their Tumor-Specific Cytotoxicity on Human Oral Squamous Carcinoma Cell Lines	Orabi MAA; Orabi EA; Awadh AAA; Alshahrani MM; Abdel-Wahab BA; Sakagami H; Hatano T;	38001804 CHEMBIOCHEM
5	Overlooked Role of Bulk Nanobubbles in the Alteration and Motion of Microplastics in the Ocean Environment	Wang Z; An C; Lee K; Feng Q;	37477614 ENCS
6	Species-specific protein-protein interactions govern the humanization of the 20S proteasome in yeast	Sultana S; Abdullah M; Li J; Hochstrasser M; Kachroo AH;	37364278 BIOLOGY
7	Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking	Orabi MAA; Orabi EA; Abdel-Sattar ES; English AM; Hatano T; Elimam H;	36423882 CHEMBIOCHEM
8	Sexual experience increases oxytocin, but not vasopressin, receptor densities in the medial preoptic area, ventromedial hypothalamus, and central amygdala of male rats	Shann Ménard	36041295 CSBN
9	Humanized yeast to model human biology, disease and evolution	Kachroo AH; Vandeloo M; Greco BM; Abdullah M;	35661208 BIOLOGY
10	Polycyclic Aromatic Hydrocarbons in the Marine Atmosphere from the Western Pacific to the Southern Ocean: Spatial Variability, Gas/Particle Partitioning, and Source Apportionment	Zhang X; Zhang ZF; Zhang X; Zhu FJ; Li YF; Cai M; Kallenborn R;	35476391 CHEMBIOCHEM
11	Pesticides in the atmosphere and seawater in a transect study from the Western Pacific to the Southern Ocean: The importance of continental discharges and air-seawater exchange	Zhang X; Zhang X; Zhang ZF; Yang PF; Li YF; Cai M; Kallenborn R;	35452973 CHEMBIOCHEM
12	BioMiCo: a supervised Bayesian model for inference of microbial community structure.	Shafiei M, Dunn KA, Boon E, MacDonald SM, Walsh DA, Gu H, Bielawski JP	25774293 BIOLOGY
13	Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.	Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA	30702898 BIOLOGY
14	Mycothermus thermophilus gen. et comb. nov., a new home for the itinerant thermophile Scytalidium thermophilum (Torula thermophila).	Natvig DO, Taylor JW, Tsang A, Hutchinson MI, Powell AJ	25550298 CSFG
15	Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica.	Hutchinson MI, Powell AJ, Tsang A, O'Toole N, Berka RM, Barry K, Grigoriev IV, Natvig DO	26608618 CSFG

Title:	Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Authors:	Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA
Link:	https://www.ncbi.nlm.nih.gov/pubmed/30702898?dopt=Abstract
DOI:	10.1021/acs.jproteome.8b00761
Publication:	Journal of proteome research
Keywords:	Metaproteomics; best practices; biogeochemistry; data sharing; ocean;
PMID:	30702898	Category:	J Proteome Res	Date Added:	2019-06-07
Dept Affiliation:	BIOLOGY 1 Woods Hole Oceanographic Institution , Woods Hole , Massachusetts 02543 , United States. 2 Department of Biology , Dalhousie University , Halifax , Nova Scotia B3H 4R2 , Canada. 3 School of Oceanography , University of Washington , Seattle , Washington 98195-7940 , United States. 4 U.S. Naval Research Laboratory , Washington , D.C. 20375 , United States. 5 Oak Ridge National Laboratory and Microbiology Department , University of Tennessee , Knoxville , Tennessee 37996 , United States. 6 Department of Biochemistry, Molecular Biology and Biophysics , University of Minnesota , Saint Paul , Minnesota 55108 , United States. 7 College of Charleston , Charleston , South Carolina 29424 , United States. 8 Department of Environmental Science , Rowan University , Glassboro , New Jersey 08028 , United States. 9 National Institute of Standards and Technology , Charleston , South Carolina 29412 , United States. 10 Department of Genome Sciences , University of Washington , Seattle , Washington 98195 , United States. 11 Department of Biology , Concordia University , Montreal , Quebec H4B 1R6 , Canada.

Description:

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

J Proteome Res. 2019 Apr 05;18(4):1461-1476

Authors: Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA

Abstract

Ocean metaproteomics is an emerging field enabling discoveries about marine microbial communities and their impact on global biogeochemical processes. Recent ocean metaproteomic studies have provided insight into microbial nutrient transport, colimitation of carbon fixation, the metabolism of microbial biofilms, and dynamics of carbon flux in marine ecosystems. Future methodological developments could provide new capabilities such as characterizing long-term ecosystem changes, biogeochemical reaction rates, and in situ stoichiometries. Yet challenges remain for ocean metaproteomics due to the great biological diversity that produces highly complex mass spectra, as well as the difficulty in obtaining and working with environmental samples. This review summarizes the progress and challenges facing ocean metaproteomic scientists and proposes best practices for data sharing of ocean metaproteomic data sets, including the data types and metadata needed to enable intercomparisons of protein distributions and annotations that could foster global ocean metaproteomic capabilities.

PMID: 30702898 [PubMed - in process]

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