Keyword search (4,164 papers available)

"CTA" Keyword-tagged Publications:

Title Authors PubMed ID
1 Efficient self-supervised Barlow Twins from limited tissue slide cohorts for colonic pathology diagnostics Notton C; Sharma V; Quoc-Huy Trinh V; Chen L; Xu M; Varma S; Hosseini MS; 41793844
CONCORDIA
2 Endangered species laws and the inclusion of Indigenous knowledges and sciences in risk assessments Grimm J; Soares BE; Zanjani LV; Ballard M; Chiblow S; Andrade RS; Duncan AT; Fraser DJ; Mandrak NE; Bernos TA; 41684052
BIOLOGY
3 Tuned to walk: cue type, beat perception, and gait dynamics during rhythmic stimulation in aging Parker A; Dalla Bella S; Penhune VB; Young L; Grenet D; Li KZH; 41661338
PSYCHOLOGY
4 Electro-washing of pipelines spills: On-site strategies for different soil matrices Rajaei E; Elektorowicz M; 40614426
ENCS
5 Sustainable Recovery of Critical Minerals from Wastes by Green Biosurfactants: A Review Deravian B; Mulligan CN; 40509347
ENCS
6 Strategies to Reduce Uncertainties from the Best Available Physicochemical Parameters Used for Modeling Novel Organophosphate Esters across Multimedia Environments Xing C; Ge J; Chen R; Li S; Wang C; Zhang X; Geng Y; Jones KC; Zhu Y; 40105294
CHEMBIOCHEM
7 Variation in flower morphology associated with higher bee diversity in urban green spaces Sinno S; MacInnis G; Lessard JP; Ziter CD; 39609370
BIOLOGY
8 Cortical-subcortical interactions underlie processing of auditory predictions measured with 7T fMRI Ara A; Provias V; Sitek K; Coffey EBJ; Zatorre RJ; 39087881
PSYCHOLOGY
9 Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases Zhao H; Karppi J; Mototsune O; Poshina D; Svartström J; Nguyen TTM; Vo TM; Tsang A; Master E; Tenkanen M; 38539167
CSFG
10 Fractals in Neuroimaging Lahmiri S; Boukadoum M; Di Ieva A; 38468046
JMSB
11 Cranberry supplementation improves physiological markers of performance in trained runners Parenteau F; Puglia VF; Roberts M; Comtois AS; Bergdahl A; 38297471
HKAP
12 Context changes judgments of liking and predictability for melodies Albury AW; Bianco R; Gold BP; Penhune VB; 38034280
PSYCHOLOGY
13 Lactate's behavioral switch in the brain: An in-silico model Soltanzadeh M; Blanchard S; Soucy JP; Benali H; 37865309
PERFORM
14 Uncertainty about predation risk: a conceptual review Crane AL; Feyten LEA; Preagola AA; Ferrari MCO; Brown GE; 37839808
BIOLOGY
15 Spin-dependent polarization and quantum Hall conductivity in decorated graphene: influence of locally induced spin-orbit-couplings and impurities Belayadi A; Vasilopoulos P; 37230067
PHYSICS
16 Removal of Nutrients from Water Using Biosurfactant Micellar-Enhanced Ultrafiltration Binte Rafiq Era S; Mulligan CN; 36838547
ENCS
17 Deep learning for collateral evaluation in ischemic stroke with imbalanced data Aktar M; Reyes J; Tampieri D; Rivaz H; Xiao Y; Kersten-Oertel M; 36635594
ENCS
18 Surfactant-enhanced mobilization of persistent organic pollutants: Potential for soil and sediment remediation and unintended consequences Bolan S; Padhye LP; Mulligan CN; Alonso ER; Saint-Fort R; Jasemizad T; Wang C; Zhang T; Rinklebe J; Wang H; Siddique KHM; Kirkham MB; Bolan N; 36265382
ENCS
19 Nonlinear Statistical Analysis of Normal and Pathological Infant Cry Signals in Cepstrum Domain by Multifractal Wavelet Leaders Lahmiri S; Tadj C; Gargour C; 36010830
ENCS
20 Utilization of a biosurfactant foam/nanoparticle mixture for treatment of oil pollutants in soil Vu KA; Mulligan CN; 35834082
ENCS
21 Energetic demands of lactation produce an increase in the expression of growth hormone secretagogue receptor in the hypothalamus and ventral tegmental area of the rat despite a reduction in circulating ghrelin Wellman M; Budin R; Woodside B; Abizaid A; 35365872
PSYCHOLOGY
22 Remediation of oil-contaminated soil using Fe/Cu nanoparticles and biosurfactants Vu KA; Mulligan CN; 35361056
ENCS
23 Te(IV) bioreduction in the sulfur autotrophic reactor: Performance, kinetics and synergistic mechanism He Y; Guo J; Song Y; Chen Z; Lu C; Han Y; Li H; Hou Y; 35228038
ENCS
24 Detection of Fusobacterium nucleatum subspecies in the saliva of pre-colorectal cancer patients, using tandem mass spectrometry Morsi H; Golizeh M; Brosseau N; Janati AI; Emami E; Ndao M; Tran SD; 34929558
BIOLOGY
25 Effects of snack intake during pregnancy and lactation on reproductive outcome in mild hyperglycemic rats Martins MG; Cruz AGD; Oliveira GP; Woodside B; Horta-Júnior JACE; Kiss ACI; 34332976
PSYCHOLOGY
26 How cerebral cortex protects itself from interictal spikes: The alpha/beta inhibition mechanism Pellegrino G; Hedrich T; Sziklas V; Lina JM; Grova C; Kobayashi E; 34002916
PERFORM
27 Neural substrates of appetitive and aversive prediction error. Iordanova MD, Yau JO, McDannald MA, Corbit LH 33453307
CSBN
28 Cancer: A turbulence problem. Uthamacumaran A 33142240
CONCORDIA
29 Infants Generalize Beliefs Across Individuals. Burnside K, Neumann C, Poulin-Dubois D 33071864
PSYCHOLOGY
30 Effects of Independent Component Analysis on Magnetoencephalography Source Localization in Pre-surgical Frontal Lobe Epilepsy Patients Pellegrino G, Xu M, Alkuwaiti A, Porras-Bettancourt M, Abbas G, Lina JM, Grova C, Kobayashi E, 32582009
PERFORM
31 Accuracy and spatial properties of distributed magnetic source imaging techniques in the investigation of focal epilepsy patients. Pellegrino G, Hedrich T, Porras-Bettancourt M, Lina JM, Aydin Ü, Hall J, Grova C, Kobayashi E 32386115
PERFORM
32 Cue-Evoked Dopamine Neuron Activity Helps Maintain but Does Not Encode Expected Value. Mendoza JA, Lafferty CK, Yang AK, Britt JP 31693885
CSBN
33 Prefrontal Cortex and Multiparity in Lactation. Opala EA, Verlezza S, Long H, Rusu D, Woodside B, Walker CD 31437474
CSBN
34 Infants attribute false beliefs to a toy crane Burnside K; Severdija V; Poulin-Dubois D; 31309631
CRDH
35 The time-varying effect of radiotherapy after breast-conserving surgery for DCIS. Rakovitch E, Sutradhar R, Hallett M, Thompson AM, Gu S, Dumeaux V, Whelan TJ, Paszat L 31368035
PERFORM
36 Gating of the neuroendocrine stress responses by stressor salience in early lactating female rats is independent of infralimbic cortex activation and plasticity. Hillerer KM, Woodside B, Parkinson E, Long H, Verlezza S, Walker CD 29397787
CSBN
37 A Cell-Free Content Mixing Assay for SNARE-Mediated Multivesicular Body-Vacuole Membrane Fusion. Karim MA, Samyn DR, Brett CL 30317513
BIOLOGY
38 A Combinatorial Approach To Study Cytochrome P450 Enzymes for De Novo Production of Steviol Glucosides in Baker's Yeast. Gold ND, Fossati E, Hansen CC, DiFalco M, Douchin V, Martin VJJ 30474973
CSFG
39 MEG-EEG Information Fusion and Electromagnetic Source Imaging: From Theory to Clinical Application in Epilepsy. Chowdhury RA, Zerouali Y, Hedrich T, Heers M, Kobayashi E, Lina JM, Grova C 26016950
PERFORM
40 Clinical yield of magnetoencephalography distributed source imaging in epilepsy: A comparison with equivalent current dipole method. Pellegrino G, Hedrich T, Chowdhury RA, Hall JA, Dubeau F, Lina JM, Kobayashi E, Grova C 29024165
PERFORM
41 Reproducibility of EEG-MEG fusion source analysis of interictal spikes: Relevance in presurgical evaluation of epilepsy. Chowdhury RA, Pellegrino G, Aydin Ü, Lina JM, Dubeau F, Kobayashi E, Grova C 29164737
PERFORM
42 The Role of Sleep in Learning Placebo Effects. Chouchou F, Dang-Vu TT, Rainville P, Lavigne G 30146053
PERFORM

 

Title:Efficient self-supervised Barlow Twins from limited tissue slide cohorts for colonic pathology diagnostics
Authors:Notton CSharma VQuoc-Huy Trinh VChen LXu MVarma SHosseini MS
Link:https://pubmed.ncbi.nlm.nih.gov/41793844/
DOI:10.1016/j.media.2026.104004
Publication:Medical image analysis
Keywords:BenchmarkColorectal cancerColorectal polypsComputational pathologyFine-tuningSelf supervised learning
PMID:41793844 Category: Date Added:2026-03-08
Dept Affiliation: CONCORDIA
1 Concordia University, 1455 De Maisonneuve Blvd. W., Montreal, Quebec, H3G 1M8, Canada. Electronic address: cassandre.notton@mail.concordia.ca.
2 Concordia University, 1455 De Maisonneuve Blvd. W., Montreal, Quebec, H3G 1M8, Canada. Electronic address: vasudev.sharma@mail.concordia.ca.
3 University of Montreal, 2900, boul. Edouard-Montpetit, Montreal, Quebec, K3T 1J4, Canada. Electronic address: quoc-huy.trinh@umontreal.ca.
4 Sunnybrook Health Science Centre, 2075 Bayview Avenue, Toronto, Ontario, M4N 3M5, Canada. Electronic address: lina.chen@sunnybrook.ca.
5 Kingston General Hospital, 76 Stuart Street, Kingston, Quebec, K7L 2V7, Canada. Electronic address: minqi.xu@kingstonhsc.ca.
6 Kingston General Hospital, 76 Stuart Street, Kingston, Quebec, K7L 2V7, Canada. Electronic address: Sonal.Varma@kingstonhsc.ca.
7 Concordia University, 1455 De Maisonneuve Blvd. W., Montreal, Quebec, H3G 1M8, Canada; Mila-Quebec Artificial Intelligence Institute, 6666, St-Urbain, #200, Montreal, Quebec, H2S 3H1, Canada. Electronic address: mahdi.hosseini@concordia.ca.

Description:

Colorectal cancer (CRC) is one of the few cancers that have an established dysplasia-carcinoma sequence that benefits from screening. Everyone over 50 years of age in Canada is eligible for CRC screening. About 20% of those people will undergo a biopsy for a pre-neoplastic polyp and, in many cases, multiple polyps. As such, these polyp biopsies make up the bulk of a pathologist's workload. Developing an efficient computational model to help screen these polyp biopsies can improve the pathologist's workflow and help guide their attention to critical areas on the slide. Deep Learning (DL) models face significant challenges in computational pathology (CPath) because of the gigapixel image size of whole-slide images and the scarcity of detailed annotated datasets. It is, therefore, crucial to leverage self-supervised learning (SSL) methods to alleviate the burden and cost of data annotation. However, current research lacks methods to apply SSL frameworks to analyze pathology data effectively. This paper aims to propose an optimized Barlow Twins framework for colorectal polyps screening. We adapt its hyperparameters, augmentation strategy and encoder to the specificity of the pathology data to enhance performance. Additionally, we investigate the best Field of View (FoV) for colorectal polyps screening and propose a new benchmark dataset for CRC screening, made of four types of colorectal polyps and normal tissue, by performing downstream tasking on MHIST and NCT-CRC-7K datasets. Furthermore, we show that the SSL representations are more meaningful and qualitative than the supervised ones and that Barlow Twins benefits from the Swin Transformer when applied to pathology data. Codes are available from https://github.com/AtlasAnalyticsLab/PathBT.





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