Keyword search (4,163 papers available)

"Wilds CJ" Authored Publications:

Title Authors PubMed ID
1 Controlling Temozolomide Efficacy by Light-Dependent Inhibition of O sup 6 /sup ‑Methylguanine DNA Methyltransferase Lopez-Miranda IR; Sim JI; Juneau G; Wilds CJ; Beharry AA; 41531960
CHEMBIOCHEM
2 DNA Replication across α-l-(3'-2')-Threofuranosyl Nucleotides Mediated by Human DNA Polymerase η Tomar R; Ghodke PP; Patra A; Smyth E; Pontarelli A; Copp W; Guengerich FP; Chaput JJ; Wilds CJ; Stone MP; Egli M; 39259676
CHEMBIOCHEM
3 Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1 Kozlov G; Jiang J; Rutherford T; Noronha AM; Wilds CJ; Gehring K; 39016322
CHEMBIOCHEM
4 A chloromethyl-triazole fluorescent chemosensor for O6-methylguanine DNA methyltransferase Ayan S; Rotaru AM; Kaye EG; Juneau G; Das S; Wilds CJ; Beharry AA; 38502038
CHEMBIOCHEM
5 C5-Propynyl modified 2'-fluoroarabinonucleic acids form stable duplexes with RNA that are RNase H competent Pontarelli A; Wilds CJ; 37667655
CHEMBIOCHEM
6 Oligonucleotides Containing C5-Propynyl Modified Arabinonucleic Acids: Synthesis, Biophysical and Antisense Properties Pontarelli A; Wilds CJ; 36857293
CHEMBIOCHEM
7 Preparation of a Convertible Spacer Containing a Disulfide Group for Versatile Functionalization of Oligonucleotides Pontarelli A; Liu JT; Oh JK; Wilds CJ; 36840706
CHEMBIOCHEM
8 Structural basis of 3'-end poly(A) RNA recognition by LARP1 Kozlov G; Mattijssen S; Jiang J; Nyandwi S; Sprules T; Iben JR; Coon SL; Gaidamakov S; Noronha AM; Wilds CJ; Maraia RJ; Gehring K; 35979957
CHEMBIOCHEM
9 Synthesis of a Convertible Linker Containing a Disulfide Group for Oligonucleotide Functionalization Pontarelli A; Liu JT; Movasat H; Ménard S; Oh JK; Wilds CJ; 35863757
CHEMBIOCHEM
10 Arabinonucleic Acids Containing C5-Propynyl Modifications Form Stable Hybrid Duplexes with RNA that are Efficiently Degraded by E. coli RNase H Pontarelli A; Wilds CJ; 35452799
CHEMBIOCHEM
11 Generation of oligonucleotide conjugates via one-pot diselenide-selenoester ligation-deselenization/alkylation Liczner C; Hanna CC; Payne RJ; Wilds CJ; 35126973
CHEMBIOCHEM
12 Beyond ribose and phosphate: Selected nucleic acid modifications for structure-function investigations and therapeutic applications Liczner C; Duke K; Juneau G; Egli M; Wilds CJ; 33981365
CHEMBIOCHEM
13 Recent Advances of DNA Tetrahedra for Therapeutic Delivery and Biosensing. Copp W, Pontarelli A, Wilds CJ 33506614
CHEMBIOCHEM
14 O6-Alkylguanine DNA Alkyltransferase Mediated Disassembly of a DNA Tetrahedron. Copp W, Wilds CJ 32543755
CHEMBIOCHEM
15 Hydrated electrons induce the formation of interstrand cross-links in DNA modified by cisplatin adducts Behmand B; Noronha AM; Wilds CJ; Marignier JL; Mostafavi M; Wagner JR; Hunting DJ; Sanche L; 32211848
CHEMBIOCHEM
16 O4-alkyl-2'-deoxythymidine cross-linked DNA to probe recognition and repair by O6-alkylguanine DNA alkyltransferases. McManus FP, O'Flaherty DK, Noronha AM, Wilds CJ 22850722
CHEMBIOCHEM
17 Preparation of covalently linked complexes between DNA and O(6)-alkylguanine-DNA alkyltransferase using interstrand cross-linked DNA. McManus FP, Khaira A, Noronha AM, Wilds CJ 23347328
CHEMBIOCHEM
18 Backbone Flexibility Influences Nucleotide Incorporation by Human Translesion DNA Polymerase η opposite Intrastrand Cross-Linked DNA. O'Flaherty DK, Guengerich FP, Egli M, Wilds CJ 26624500
CHEMBIOCHEM
19 O(6)-Alkylguanine DNA Alkyltransferase Repair Activity Towards Intrastrand Cross-Linked DNA is Influenced by the Internucleotide Linkage. O'Flaherty DK, Wilds CJ 26692563
CHEMISTRY
20 Stabilization of i-motif structures by 2'-β-fluorination of DNA. Assi HA, Harkness RW, Martin-Pintado N, Wilds CJ, Campos-Olivas R, Mittermaier AK, González C, Damha MJ 27166371
CHEMBIOCHEM
21 Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes. Carter AR, Seaberg MH, Fan HF, Sun G, Wilds CJ, Li HW, Perkins TT 27220465
CHEMBIOCHEM
22 Lesion Orientation of O4-Alkylthymidine Influences Replication by Human DNA Polymerase η. O'Flaherty DK, Patra A, Su Y, Guengerich FP, Egli M, Wilds CJ 27574558
CHEMBIOCHEM
23 Preparation of Intrastrand {G}O(6) -Alkylene-O(6) {G} Cross-Linked Oligonucleotides. O'Flaherty DK, Wilds CJ 27584704
CHEMBIOCHEM
24 O6-2'-Deoxyguanosine-butylene-O6-2'-deoxyguanosine DNA Interstrand Cross-Links Are Replication-Blocking and Mutagenic DNA Lesions. Xu W, Kool D, O'Flaherty DK, Keating AM, Sacre L, Egli M, Noronha A, Wilds CJ, Zhao L 27768841
CHEMBIOCHEM
25 Site-specific covalent capture of human O6-alkylguanine-DNA-alkyltransferase using single-stranded intrastrand cross-linked DNA. O'Flaherty DK, Wilds CJ 27886318
CHEMBIOCHEM
26 Structural basis of interstrand cross-link repair by O6-alkylguanine DNA alkyltransferase. Denisov AY, McManus FP, O'Flaherty DK, Noronha AM, Wilds CJ 28937154
CHEMBIOCHEM
27 Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Copp W, Denisov AY, Xie J, Noronha AM, Liczner C, Safaee N, Wilds CJ, Gehring K 28973475
CHEMBIOCHEM
28 AGT Activity Towards Intrastrand Crosslinked DNA is Modulated by the Alkylene Linker. O'Flaherty DK, Wilds CJ 28980757
CHEMBIOCHEM
29 Altering Residue 134 Confers an Increased Substrate Range of Alkylated Nucleosides to the E. coli OGT Protein. Schoonhoven NM, O'Flaherty DK, McManus FP, Sacre L, Noronha AM, Kornblatt MJ, Wilds CJ 29137116
CHEMBIOCHEM
30 Covalent capture of OGT's active site using engineered human-E. coli chimera and intrastrand DNA cross-links. Copp W, O'Flaherty DK, Wilds CJ 30430154
CHEMBIOCHEM

 

Title:Oligonucleotides Containing C5-Propynyl Modified Arabinonucleic Acids: Synthesis, Biophysical and Antisense Properties
Authors:Pontarelli AWilds CJ
Link:https://pubmed.ncbi.nlm.nih.gov/36857293/
DOI:10.1002/cbic.202300068
Publication:Chembiochem : a European journal of chemical biology
Keywords:E coli RNase Hantisense therapyarabinonucleic acidsnucleoside synthesisoligonucleotide synthesis
PMID:36857293 Category: Date Added:2023-03-01
Dept Affiliation: CHEMBIOCHEM
1 Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada.

Description:

The introduction of chemical modifications on the nucleic acid scaffold has allowed for the progress of antisense oligonucleotides (ASOs) in the clinic for the treatment of a variety of disorders. In contribution to the repertoire of gene-silencing nucleic acid modifications, herein we report the synthesis and incorporation of C5-propynyl arabinouridine (araUP ) and arabinocytidine (araCP ) into mixed-base ASOs containing a pyrimidine core. Substitution of the core with araUP and araCP resulted in stabilization of the duplex formed with RNA but not with DNA. Similar results were obtained with ASOs bearing phosphorothioate linkages or methoxyethyl (MOE) wings in a gapmer design. All modified ASOs were compatible with E. coli RNase H mediated degradation of target RNA. Substitution of DNA for araUP and araCP in the central portion of a gapmer with MOE wings demonstrated improved nuclease resistance. These results suggest C5-modified arabinonucleic acids may serve as a potential chemical modification for therapeutic ASOs.





BookR developed by Sriram Narayanan
for the Concordia University School of Health
Copyright © 2011-2026
Cookie settings
Concordia University