Keyword search (4,163 papers available)

"Pontarelli A" Authored Publications:

Title Authors PubMed ID
1 DNA Replication across α-l-(3'-2')-Threofuranosyl Nucleotides Mediated by Human DNA Polymerase η Tomar R; Ghodke PP; Patra A; Smyth E; Pontarelli A; Copp W; Guengerich FP; Chaput JJ; Wilds CJ; Stone MP; Egli M; 39259676
CHEMBIOCHEM
2 C5-Propynyl modified 2'-fluoroarabinonucleic acids form stable duplexes with RNA that are RNase H competent Pontarelli A; Wilds CJ; 37667655
CHEMBIOCHEM
3 Oligonucleotides Containing C5-Propynyl Modified Arabinonucleic Acids: Synthesis, Biophysical and Antisense Properties Pontarelli A; Wilds CJ; 36857293
CHEMBIOCHEM
4 Preparation of a Convertible Spacer Containing a Disulfide Group for Versatile Functionalization of Oligonucleotides Pontarelli A; Liu JT; Oh JK; Wilds CJ; 36840706
CHEMBIOCHEM
5 Synthesis of a Convertible Linker Containing a Disulfide Group for Oligonucleotide Functionalization Pontarelli A; Liu JT; Movasat H; Ménard S; Oh JK; Wilds CJ; 35863757
CHEMBIOCHEM
6 Arabinonucleic Acids Containing C5-Propynyl Modifications Form Stable Hybrid Duplexes with RNA that are Efficiently Degraded by E. coli RNase H Pontarelli A; Wilds CJ; 35452799
CHEMBIOCHEM
7 Recent Advances of DNA Tetrahedra for Therapeutic Delivery and Biosensing. Copp W, Pontarelli A, Wilds CJ 33506614
CHEMBIOCHEM

 

Title:Arabinonucleic Acids Containing C5-Propynyl Modifications Form Stable Hybrid Duplexes with RNA that are Efficiently Degraded by E. coli RNase H
Authors:Pontarelli AWilds CJ
Link:https://pubmed.ncbi.nlm.nih.gov/35452799/
DOI:10.1016/j.bmcl.2022.128744
Publication:Bioorganic & medicinal chemistry letters
Keywords:Arabino nucleic acidsC5-propynyl nucleosidesE coli RNase HModified oligonucleotidesNuclease stability
PMID:35452799 Category: Date Added:2022-04-23
Dept Affiliation: CHEMBIOCHEM
1 Department of Chemistry and Biochemistry, Faculty of Arts and Science, Concordia University, 7141 Rue Sherbrooke Ouest, Montréal, Québec, H4B 1R6, Canada.
2 Department of Chemistry and Biochemistry, Faculty of Arts and Science, Concordia University, 7141 Rue Sherbrooke Ouest, Montréal, Québec, H4B 1R6, Canada. Electronic address: Chris.Wilds@concordia.ca.

Description:

The promise of the antisense approach to treat a variety of diseases with oligonucleotides and solutions to challenges that have been encountered in their development is attributable to chemical modification of the nucleic acid scaffold. Herein, we describe preliminary data regarding the synthesis of a novel C5-propynyl-ß-D-arabinouridine (araUP) phosphoramidite and its incorporation into oligonucleotides. Substitution of araUP in dT18 results in minor stabilization of duplexes formed with RNA when modifications are placed consecutively and a uniformly modified araUP 18-mer increases stability by 34 °C relative to DNA. The modified oligomer exhibits improved nuclease and serum stability when compared to DNA and duplexes formed between RNA and araUP oligonucleotides are substrates for E. coli RNase H. These preliminary results merit further investigation into C5-propynyl modified arabino nucleic acids for potential therapeutic gene silencing applications.





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