Keyword search (4,163 papers available)

"Peslherbe GH" Authored Publications:

Title Authors PubMed ID
1 Synthesis and Acidic pH-Responsive Disassembly of Dual-Location Shell-Sheddable/Core-Degradable Block Copolymer Nanoassemblies and Their Controlled Drug Delivery Andrade-Gagnon B; Casillas-Popova SN; Shamekhi M; Bairagi K; Peslherbe GH; Oh JK; 41524627
CHEMBIOCHEM
2 Molecular docking for screening chemicals of environmental health concern: insight from a case study on bisphenols Norouzi S; Nahmiach N; Perez G; Zhu Y; Peslherbe GH; Muir DCG; Zhang X; 40970403
CHEMBIOCHEM
3 Development of dual acid-visible light-degradable core-crosslinked nanogels with extended conjugate aromatic imines for enhanced drug delivery Bairagi K; Shamekhi M; Tountas I; Letourneau N; Peslherbe GH; Piekny A; Oh JK; 40637173
BIOLOGY
4 High-throughput screening and DFT characterization of bimetallic alloy catalysts for the nitrogen reduction reaction Shamekhi M; Toghraei A; Guay D; Peslherbe GH; 40626812
PHYSICS
5 Comprehensive DFT investigation of small-molecule adsorption on the paradigm M-MOF-74 family of metal-organic frameworks Jodaeeasl N; Wang S; Hu A; Peslherbe GH; 39829319
CERMM
6 Modeling predicts facile release of nitrite but not nitric oxide from the thionitrate CH3SNO2 with relevance to nitroglycerin bioactivation Parmar V; Orabi EA; English AM; Peslherbe GH; 39738238
CERMM
7 Theoretical evidence that Cu(I) complexation promotes degradation of S-nitrosothiols Toubin C; Yeung DY; English AM; Peslherbe GH; 12475301
CERMM
8 Quantum effects on the free energy of ionic aqueous clusters evaluated by nonequilibrium computational methods Hernández de la Peña L; Peslherbe GH; 20377185
CERMM
9 Mechanically induced generation of highly reactive excited-state oxygen molecules in cluster scattering Nguyen TN; Timerghazin QK; Vach H; Peslherbe GH; 21322678
CERMM
10 Conformational analysis of 18-azacrown-6 and its bonding with late first transition series divalent metals: insight from DFT combined with NPA and QTAIM analyses Varadwaj PR; Varadwaj A; Peslherbe GH; Marques HM; 21961695
CERMM
11 Photoinduced electron transfer and solvation dynamics in aqueous clusters: comparison of the photoexcited iodide-water pentamer and the water pentamer anion Mak CC; Timerghazin QK; Peslherbe GH; 22466252
CHEMBIOCHEM
12 Effective simulations of gas diffusion through kinetically accessible tunnels in multisubunit proteins: O2 pathways and escape routes in T-state deoxyhemoglobin Shadrina MS; English AM; Peslherbe GH; 22690872
CERMM
13 An electronic structure theory investigation of the physical chemistry of the intermolecular complexes of cyclopropenylidene with hydrogen halides Varadwaj PR; Varadwaj A; Peslherbe GH; 22696309
CERMM
14 Substituent effects in the absorption spectra of phenol radical species: origin of the redshift caused by 3,5-dimethoxyl substitution Zhang L; Muchall HM; Peslherbe GH; 23216064
CHEMBIOCHEM
15 Computational investigation of the hydration of alkyl diammonium chlorides and their effect on THF/water phase separation Jahangiri S; Mercer SM; Jessop PG; Peslherbe GH; 23789929
CHEMBIOCHEM
16 Photoexcitation and charge-transfer-to-solvent relaxation dynamics of the I(-)(CH3CN) complex Mak CC; Timerghazin QK; Peslherbe GH; 23819756
CHEMBIOCHEM
17 Relaxation pathways of photoexcited iodide-methanol clusters: a computational investigation Mak CC; Peslherbe GH; 24922343
CHEMBIOCHEM
18 Insights into dietary phytochemicals targeting Parkinson's disease key genes and pathways: A network pharmacology approach Sasikumar DSN; Thiruselvam P; Sundararajan V; Ravindran R; Gunasekaran S; Madathil D; Kaliamurthi S; Peslherbe GH; Selvaraj G; Sudhakaran SL; 38460310
CHEMBIOCHEM
19 Advances in Drug Design and Development for Human Therapeutics Using Artificial Intelligence-II Wei D; Peslherbe GH; Selvaraj G; Wang Y; 38136606
CHEMBIOCHEM
20 Advances in Drug Design and Development for Human Therapeutics Using Artificial Intelligence-I Wei D; Peslherbe GH; Selvaraj G; Wang Y; 36551273
CHEMBIOCHEM
21 Structure-Based Virtual Screening Reveals Ibrutinib and Zanubrutinib as Potential Repurposed Drugs against COVID-19 Kaliamurthi S; Selvaraj G; Selvaraj C; Singh SK; Wei DQ; Peslherbe GH; 34209188
CHEMBIOCHEM
22 Are the Allergic Reactions of COVID-19 Vaccines Caused by mRNA Constructs or Nanocarriers? Immunological Insights Selvaraj G; Kaliamurthi S; Peslherbe GH; Wei DQ; 34021862
CHEMBIOCHEM
23 Identifying potential drug targets and candidate drugs for COVID-19: biological networks and structural modeling approaches Selvaraj G; Kaliamurthi S; Peslherbe GH; Wei DQ; 33968364
CERMM
24 Circulating miR-1246 Targeting UBE2C, TNNI3, TRAIP, UCHL1 Genes and Key Pathways as a Potential Biomarker for Lung Adenocarcinoma: Integrated Biological Network Analysis Huang S; Wei YK; Kaliamurthi S; Cao Y; Nangraj AS; Sui X; Chu D; Wang H; Wei DQ; Peslherbe GH; Selvaraj G; Shi J; 33050659
CHEMBIOCHEM
25 Computational insight into hydrogen persulfide and a new additive model for chemical and biological simulations Orabi EA; Peslherbe GH; 31297500
CHEMBIOCHEM

 

Title:Comprehensive DFT investigation of small-molecule adsorption on the paradigm M-MOF-74 family of metal-organic frameworks
Authors:Jodaeeasl NWang SHu APeslherbe GH
Link:https://pubmed.ncbi.nlm.nih.gov/39829319/
DOI:10.1039/d4cp02873b
Publication:Physical chemistry chemical physics : PCCP
Keywords:
PMID:39829319 Category: Date Added:2025-01-21
Dept Affiliation: CERMM
1 Centre for Research in Molecular Modeling, Concordia University, Montreal, Canada. gilles.peslherbe@concordia.ca.
2 Department of Physics, Concordia University, Montreal, Canada.
3 Suffield Research Centre, Defence Research and Development Canada, Medicine Hat, Canada.
4 Department of Chemistry and Biochemistry and Department of Chemical and Materials Engineering, Concordia University, Montreal, Canada.

Description:

The capture of toxic chemicals such as NH3, H2S, NO2 and SO2 is essential due to the tremendous threats they pose to human health and the environment. The M-MOF-74 family of metal-organic frameworks has recently gained attention as a promising category of sorbent materials for the capture of toxic chemicals; however, no clear and comprehensive relationships have been established between the capability of the M-MOF-74 to capture all target toxic chemicals and their properties such as the nature and magnetic state of the metal sites. Density-functional theory (DFT) is employed to investigate the binding energy of target molecules on M-MOF-74 with different metals including Mg, Ti, V, Cr, Mn, Fe, Co, Ni, Cu and Zn. The Hubbard U correction is employed to properly treat d electrons of transition metals and its effect explored on the bandgap of M-MOF-74. The magnetic properties of M-MOF-74 are investigated in detail along with their impact on the target molecule adsorption. Our calculations with DFT+U lead to good agreement with available experimentally determined bandgaps and structural properties. M-MOF-74 (M = Ti, V, Cr, Mn, Fe, Co and Cu) exhibit antiferromagnetic behavior, while ferromagnetic behavior prevails for Ni-MOF-74. Not surprisingly, the coordinatively unsaturated metals (M = Mg, Ti, V, Cr, Mn, Fe, Co, Ni, Cu and Zn) are the most likely sites for chemical adsorption of the target adsorbates, and V-MOF-74 and Ti-MOF-74 predicted to be efficient adsorbents for the target molecules, which can be rationalized on the basis of the metal d-band features. The spin configuration of transition metals in M-MOF-74 is found to have a negligible effect on adsorbate binding energies, which suggests that common DFT calculations without careful consideration of the material magnetic states can indeed be used to rapidly screen binding energies of adsorbates on such MOFs, with some notable exceptions; for instance, V-MOF-74 shows potential for magnetic sensing of NO2. This study provides further insight into the role of different unsaturated metals and their magnetic state for the removal of target toxic molecules by metal-organic frameworks.





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