Keyword search (4,163 papers available)

"Pa" Authored Publications:

Title Authors PubMed ID
1 On traits matching and the modular organization of food web and occurrence networks Borzone Mas D; Scarabotti PA; Vaschetto PA; Alvarenga P; Vazquez M; Arim M; 41840807
BIOLOGY
2 Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture Steindorff AS; Cai FM; Ding M; Jiang S; Atanasova L; Baker SE; Barbosa-Filho JR; Bayram Akcapinar G; Brown DW; Chaverri P; Chen P; Chenthamara K; Daum C; Drula E; Dubey M; Brandström Durling M; Flatschacher D; Ebner T; Emri T; Gao R; Georg RC; Henrissat B; Hermosa R; Herrera-Estrella A; Hinterdobler W; Kainz P; Karlsson M; Kredics L; Kubicek CP; Kuo A; LaButti K; Lipzen A; Lorito M; Mach RL; Manganiello G; Marik T; Martinez-Reyes N; Mayrhofer-Reinhartshuber M; Miskei M; Moisan MC; Mondo S; Monte E; Ng V; Pa 41775999
GENOMICS
3 Temporal and Sex-Related Differences in Knee Biomechanics Over the Course of the Varsity Athletic Season: Pre- and Postseason Knee Kinematics in Collegiate Varsity Athletes Using Kinect Joseph T; Babouras A; Zhao KY; Corban J; Martineau PA; 41230424
HKAP
4 Modeling the Ethylene Sequence Length Distribution of Metallocene-Catalyzed Bimodal Polyethylene Sattari M; Kwakye-Nimo S; Inn Y; Karimi PA; Wood-Adams PM; 41078728
ENCS
5 Inferring concussion history in athletes using pose and ground reaction force estimation and stability analysis of plyometric exercise videos Alves W; Babouras A; Martineau PA; Schutt D; Robbins S; Fevens T; 40632382
ENCS
6 The Effect of the FIFA-11+ ACL Injury Prevention Program on Drop Vertical Jump Biomechanics in Varsity Athletes: A Prospective Observational Cohort Study Cierson T; Zhao K; Belkhelladi M; Babouras A; Jing J; Faith J; Corban J; Martineau PA; 40303320
HKAP
7 Geological Net Zero and the need for disaggregated accounting for carbon sinks Allen MR; Frame DJ; Friedlingstein P; Gillett NP; Grassi G; Gregory JM; Hare W; House J; Huntingford C; Jenkins S; Jones CD; Knutti R; Lowe JA; Matthews HD; Meinshausen M; Meinshausen N; Peters GP; Plattner GK; Raper S; Rogelj J; Stott PA; Solomon S; Stocker TF; Weaver AJ; Zickfeld K; 39557072
PHYSICS
8 Defects in meiosis I contribute to the genesis of androgenetic hydatidiform moles Rezaei M; Liang M; Yalcin Z; Martin JH; Kazemi P; Bareke E; Ge ZJ; Fardaei M; Benadiva C; Hemida R; Hassan A; Maher GJ; Abdalla E; Buckett W; Bolze PA; Sandhu I; Duman O; Agrawal S; Qian J; Vallian Broojeni J; Bhati L; Miron P; Allias F; Selim A; Fisher RA; Seckl MJ; Sauthier P; Touitou I; Tan SL; Majewski J; Taketo T; Slim R; 39545410
BIOLOGY
9 Comparing the Drop Vertical Jump Tracking Performance of the Azure Kinect to the Kinect V2 Abdelnour P; Zhao KY; Babouras A; Corban JPAH; Karatzas N; Fevens T; Martineau PA; 38931598
CSSE
10 COVID-19 virtual patient cohort reveals immune mechanisms driving disease outcomes Jenner AL; Aogo RA; Alfonso S; Crowe V; Smith AP; Morel PA; Davis CL; Smith AM; Craig M; 33442689
MATHSTATS
11 Comparing novel smartphone pose estimation frameworks with the Kinect V2 for knee tracking during athletic stress tests Babouras A; Abdelnour P; Fevens T; Martineau PA; 38730186
ENCS
12 Comparing a Portable Motion Analysis System against the Gold Standard for Potential Anterior Cruciate Ligament Injury Prevention and Screening Karatzas N; Abdelnour P; Corban JPAH; Zhao KY; Veilleux LN; Bergeron SG; Fevens T; Rivaz H; Babouras A; Martineau PA; 38544237
PERFORM
13 Dynamic regulation of inter-organelle communication by ubiquitylation controls skeletal muscle development and disease onset Mansur A; Joseph R; Kim ES; Jean-Beltran PM; Udeshi ND; Pearce C; Jiang H; Iwase R; Milev MP; Almousa HA; McNamara E; Widrick J; Perez C; Ravenscroft G; Sacher M; Cole PA; Carr SA; Gupta VA; 37432316
BIOLOGY
14 Household income and maternal education in early childhood and risk of overweight and obesity in late childhood: Findings from seven birth cohort studies in six high-income countries White PA; Awad YA; Gauvin L; Spencer NJ; McGrath JJ; Clifford SA; Nikiema B; Yang-Huang J; Goldhaber-Fiebert JD; Markham W; Mensah FK; van Grieken A; Raat H; Jaddoe VWV; Ludvigsson J; Faresjö T; 35821522
PERFORM
15 External validation of a shortened screening tool using individual participant data meta-analysis: A case study of the Patient Health Questionnaire-Dep-4 Harel D; Levis B; Sun Y; Fischer F; Ioannidis JPA; Cuijpers P; Patten SB; Ziegelstein RC; Markham S; Benedetti A; Thombs BD; 34780986
CONCORDIA
16 COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes Jenner AL; Aogo RA; Alfonso S; Crowe V; Deng X; Smith AP; Morel PA; Davis CL; Smith AM; Craig M; 34260666
MATHSTATS
17 Three-Dimensional (3D) Animation and Calculation for the Assessment of Engaging Hill-Sachs Lesions With Computed Tomography 3D Reconstruction. Tat J, Crawford J, Chong J, Powell T, Fevens TG, Popa T, Martineau PA 33615252
ENCS
18 Hippocampal Degeneration and Behavioral Impairment During Alzheimer-Like Pathogenesis Involves Glutamate Excitotoxicity. Olajide OJ, Gbadamosi IT, Yawson EO, Arogundade T, Lewu FS, Ogunrinola KY, Adigun OO, Bamisi O, Lambe E, Arietarhire LO, Oluyomi OO, Idowu OK, Kareem R, Asogwa NT, Adeniyi PA 33420680
PSYCHOLOGY
19 Thermal properties of lipid bilayers derived from the transient heating regime of upconverting nanoparticles Bastos ARN; Brites CDS; Rojas-Gutierrez PA; Ferreira RAS; Longo RL; DeWolf C; Capobianco JA; Carlos LD; 33283824
CNSR
20 Overestimation of Postpartum Depression Prevalence Based on a 5-item Version of the EPDS: Systematic Review and Individual Participant Data Meta-analysis Thombs BD; Levis B; Lyubenova A; Neupane D; Negeri Z; Wu Y; Sun Y; He C; Krishnan A; Vigod SN; Bhandari PM; Imran M; Rice DB; Azar M; Chiovitti MJ; Saadat N; Riehm KE; Boruff JT; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; Patten SB; Shrier I; Ziegelstein RC; Comeau L; Mitchell ND; Tonelli M; Barnes J; Beck CT; Bindt C; Figueiredo B; Helle N; Howard LM; Kohlhoff J; Kozinszky Z; Leonardou AA; Radoš SN; Quispel C; Rochat TJ; Stein A; Stewart RC; Tadinac M; Tandon SD; Tendais I; Töreki A; Tran TD; Trevillion K; Turner K; Vega-Dienstmaier JM; Benedetti A; 33104415
LIBRARY
21 Pain in Youth with Sickle Cell Disease: A Report from the Sickle Cell Clinical Research and Intervention Program. Alberts NM, Kang G, Li C, Richardson PA, Hodges J, Hankins JS, Klosky JL 33093339
PSYCHOLOGY
22 Depression prevalence based on the Edinburgh Postnatal Depression Scale compared to Structured Clinical Interview for DSM DIsorders classification: Systematic review and individual participant data meta-analysis Lyubenova A; Neupane D; Levis B; Wu Y; Sun Y; He C; Krishnan A; Bhandari PM; Negeri Z; Imran M; Rice DB; Azar M; Chiovitti MJ; Saadat N; Riehm KE; Boruff JT; Ioannidis JPA; Cuijpers P; Gilbody S; Kloda LA; Patten SB; Shrier I; Ziegelstein RC; Comeau L; Mitchell ND; Tonelli M; Vigod SN; Aceti F; Barnes J; Bavle AD; Beck CT; Bindt C; Boyce PM; Bunevicius A; Chaudron LH; Favez N; Figueiredo B; Garcia-Esteve L; Giardinelli L; Helle N; Howard LM; Kohlhoff J; Kusminskas L; Kozinszky Z; Lelli L; Leonardou AA; Meuti V; Radoš SN; García PN; Pawlby SJ; Quispel C; Robertson-Blackmore E; Rochat TJ; Sharp DJ; Siu BWM; Stein A; Stewart RC; Tadinac M; Tandon SD; Tendais I; Töreki A; Torres-Giménez A; Tran TD; Trevillion K; Turner K; Vega-Dienstmaier JM; Benedetti A; Thombs BD; 33089942
CONCORDIA
23 Probability of Major Depression Classification Based on the SCID, CIDI, and MINI Diagnostic Interviews: A Synthesis of Three Individual Participant Data Meta-Analyses Wu Y; Levis B; Ioannidis JPA; Benedetti A; Thombs BD; 32814337
LIBRARY
24 GW190521: A Binary Black Hole Merger with a Total Mass of 150  M_{⊙}. Abbott R, Abbott TD, Abraham S, Acernese F, Ackley K, Adams C, Adhikari RX, Adya VB, Affeldt C, Agathos M, Agatsuma K, Aggarwal N, Aguiar OD, Aich A, Aiello L, Ain A, Ajith P, Akcay S, Allen G, Allocca A, Altin PA, Amato A, Anand S, Ananyeva A, Anderson SB, Anderson WG, Angelova SV, Ansoldi S, Antier S, Appert S, Arai K, Araya MC, Areeda JS, Arène M, Arnaud N, Aronson SM, Arun KG, Asali Y, Ascenzi S, Ashton G, Aston SM, Astone P, Aubin F, Aufmuth P, AultONeal K, Austin C, Avendano V, Babak S, Bacon P, Badar 32955328
NA
25 Late-spring frost risk between 1959 and 2017 decreased in North America but increased in Europe and Asia. Zohner CM, Mo L, Renner SS, Svenning JC, Vitasse Y, Benito BM, Ordonez A, Baumgarten F, Bastin JF, Sebald V, Reich PB, Liang J, Nabuurs GJ, de-Miguel S, Alberti G, Antón-Fernández C, Balazy R, Brändli UB, Chen HYH, Chisholm C, Cienciala E, Dayanandan S, Fayle TM, Frizzera L, Gianelle D, Jagodzinski AM, Jaroszewicz B, Jucker T, Kepfer-Rojas S, Khan ML, Kim HS, Korjus H, Johannsen VK, Laarmann D, Lang M, Zawila-Niedzwiecki T, Niklaus PA, Paquette A, Pretzsch H, Saikia P, Schall P, Šeben V, Svoboda M, Tikhonova E, Viana H, Zhang C, Zhao X, Crowther TW 32393624
BIOLOGY
26 Patient Health Questionnaire-9 scores do not accurately estimate depression prevalence: individual participant data meta-analysis Levis B; Benedetti A; Ioannidis JPA; Sun Y; Negeri Z; He C; Wu Y; Krishnan A; Bhandari PM; Neupane D; Imran M; Rice DB; Riehm KE; Saadat N; Azar M; Boruff J; Cuijpers P; Gilbody S; Kloda LA; McMillan D; Patten SB; Shrier I; Ziegelstein RC; Alamri SH; Amtmann D; Ayalon L; Baradaran HR; Beraldi A; Bernstein CN; Bhana A; Bombardier CH; Carter G; Chagas MH; Chibanda D; Clover K; Conwell Y; Diez-Quevedo C; Fann JR; Fischer FH; Gholizadeh L; Gibson LJ; Green EP; Greeno CG; Hall BJ; Haroz EE; Ismail K; Jetté N; Khamseh ME; Kwan Y; Lara MA; Liu SI; Loureiro SR; Löwe B; Marrie RA; Marsh L; McGuire A; Muramatsu K; Navarrete L; Osório FL; Petersen I; Picardi A; Pugh SL; Quinn TJ; Rooney AG; Shinn EH; Sidebottom A; Spangenberg L; Tan PLL; Taylor-Rowan M; Turner A; van Weert HC; Vöhringer PA; Wagner LI; White J; Winkley K; Thombs BD; 32105798
LIBRARY
27 Probability of major depression diagnostic classification based on the SCID, CIDI and MINI diagnostic interviews controlling for Hospital Anxiety and Depression Scale - Depression subscale scores: An individual participant data meta-analysis of 73 primary studies Wu Y; Levis B; Sun Y; Krishnan A; He C; Riehm KE; Rice DB; Azar M; Yan XW; Neupane D; Bhandari PM; Imran M; Chiovitti MJ; Saadat N; Boruff JT; Cuijpers P; Gilbody S; McMillan D; Ioannidis JPA; Kloda LA; Patten SB; Shrier I; Ziegelstein RC; Henry M; Ismail Z; Loiselle CG; Mitchell ND; Tonelli M; Al-Adawi S; Beraldi A; Braeken APBM; Büel-Drabe N; Bunevicius A; Carter G; Chen CK; Cheung G; Clover K; Conroy RM; Cukor D; da Rocha E Silva CE; Dabscheck E; Daray FM; Douven E; Downing MG; Feinstein A; Ferentinos PP; Fischer FH; Flint AJ; Fujimori M; Gallagher P; Gandy M; Goebel S; Grassi L; Härter M; Jenewein J; Jetté N; Julião M; Kim JM; Kim SW; Kjærgaard M; Köhler S; Loosman WL; Löwe B; Martin-Santos R; Massardo L; Matsuoka Y; Mehnert A; Michopoulos I; Misery L; Navines R; O' Donnell ML; Öztürk A; Peceliuniene J; Pintor L; Ponsford JL; Quinn TJ; Reme SE; Reuter K; Rooney AG; Sánchez-González R; Schwarzbold ML; Senturk Cankorur V; Shaaban J; Sharpe L; Sharpe M; Simard S; Singer S; Stafford L; Stone J; Sultan S; Teixeira AL; Tiringer I; Turner A; Walker J; Walterfang M; Wang LJ; White J; Wong DK; Benedetti A; Thombs BD; 31911325
LIBRARY
28 Considering Drug-Associated Contexts in Substance Use Disorders and Treatment Development. LeCocq MR, Randall PA, Besheer J, Chaudhri N 31898285
CSBN
29 Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Riglar DT, Richmond DL, Potvin-Trottier L, Verdegaal AA, Naydich AD, Bakshi S, Leoncini E, Lyon LG, Paulsson J, Silver PA 31604953
BIOLOGY
30 Comparison of major depression diagnostic classification probability using the SCID, CIDI, and MINI diagnostic interviews among women in pregnancy or postpartum: An individual participant data meta-analysis Levis B; McMillan D; Sun Y; He C; Rice DB; Krishnan A; Wu Y; Azar M; Sanchez TA; Chiovitti MJ; Bhandari PM; Neupane D; Saadat N; Riehm KE; Imran M; Boruff JT; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; Patten SB; Shrier I; Ziegelstein RC; Comeau L; Mitchell ND; Tonelli M; Vigod SN; Aceti F; Alvarado R; Alvarado-Esquivel C; Bakare MO; Barnes J; Beck CT; Bindt C; Boyce PM; Bunevicius A; Couto TCE; Chaudron LH; Correa H; de Figueiredo FP; Eapen V; Fernandes M; Figueiredo B; Fisher JRW; Garcia-Esteve L; Giardinelli L; Helle N; Howard LM; Khalifa DS; Kohlhoff J; Kusminskas L; Kozinszky Z; Lelli L; Leonardou AA; Lewis BA; Maes M; Meuti V; Nakic Radoš S; Navarro García P; Nishi D; Okitundu Luwa E-Andjafono D; Robertson-Blackmore E; Rochat TJ; Rowe HJ; Siu BWM; Skalkidou A; Stein A; Stewart RC; Su KP; Sundström-Poromaa I; Tadinac M; Tandon SD; Tendais I; Thiagayson P; Töreki A; Torres-Giménez A; Tran TD; Trevillion K; Turner K; Vega-Dienstmaier JM; Wynter K; Yonkers KA; Benedetti A; Thombs BD; 31568624
LIBRARY
31 Reverse production effect: children recognize novel words better when they are heard rather than produced. Zamuner TS, Strahm S, Morin-Lessard E, Page MPA 29143412
PSYCHOLOGY
32 The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate. Huot Y, Brown CA, Potvin G, Antoniades D, Baulch HM, Beisner BE, Bélanger S, Brazeau S, Cabana H, Cardille JA, Del Giorgio PA, Gregory-Eaves I, Fortin MJ, Lang AS, Laurion I, Maranger R, Prairie YT, Rusak JA, Segura PA, Siron R, Smol JP, Vinebrooke RD, Walsh DA 31419692
BIOLOGY
33 Equivalency of the diagnostic accuracy of the PHQ-8 and PHQ-9: a systematic review and individual participant data meta-analysis Wu Y; Levis B; Riehm KE; Saadat N; Levis AW; Azar M; Rice DB; Boruff J; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; McMillan D; Patten SB; Shrier I; Ziegelstein RC; Akena DH; Arroll B; Ayalon L; Baradaran HR; Baron M; Bombardier CH; Butterworth P; Carter G; Chagas MH; Chan JCN; Cholera R; Conwell Y; de Man-van Ginkel JM; Fann JR; Fischer FH; Fung D; Gelaye B; Goodyear-Smith F; Greeno CG; Hall BJ; Harrison PA; Härter M; Hegerl U; Hides L; Hobfoll SE; Hudson M; Hyphantis T; Inagaki M; Jetté N; Khamseh ME; Kiely KM; Kwan Y; Lamers F; Liu SI; Lotrakul M; Loureiro SR; Löwe B; McGuire A; Mohd-Sidik S; Munhoz TN; Muramatsu K; Osório FL; Patel V; Pence BW; Persoons P; Picardi A; Reuter K; Rooney AG; Santos IS; Shaaban J; Sidebottom A; Simning A; Stafford L; Sung S; Tan PLL; Turner A; van Weert HC; White J; Whooley MA; Winkley K; Yamada M; Benedetti A; Thombs BD; 31298180
LIBRARY
34 Development of a particle-trap preconcentration-soft ionization mass spectrometric technique for the quantification of mercury halides in air Deeds DA; Ghoshdastidar A; Raofie F; Guérette ÉA; Tessier A; Ariya PA; 25837315
MASSSPEC
35 Probability of major depression diagnostic classification using semi-structured versus fully structured diagnostic interviews Levis B; Benedetti A; Riehm KE; Saadat N; Levis AW; Azar M; Rice DB; Chiovitti MJ; Sanchez TA; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; McMillan D; Patten SB; Shrier I; Steele RJ; Ziegelstein RC; Akena DH; Arroll B; Ayalon L; Baradaran HR; Baron M; Beraldi A; Bombardier CH; Butterworth P; Carter G; Chagas MH; Chan JCN; Cholera R; Chowdhary N; Clover K; Conwell Y; de Man-van Ginkel JM; Delgadillo J; Fann JR; Fischer FH; Fischler B; Fung D; Gelaye B; Goodyear-Smith F; Greeno CG; Hall BJ; Hambridge J; Harrison PA; Hegerl U; Hides L; Hobfoll SE; Hudson M; Hyphantis T; Inagaki M; Ismail K; Jetté N; Khamseh ME; Kiely KM; Lamers F; Liu SI; Lotrakul M; Loureiro SR; Löwe B; Marsh L; McGuire A; Mohd Sidik S; Munhoz TN; Muramatsu K; Osório FL; Patel V; Pence BW; Persoons P; Picardi A; Rooney AG; Santos IS; Shaaban J; Sidebottom A; Simning A; Stafford L; Sung S; Tan PLL; Turner A; van der Feltz-Cornelis CM; van Weert HC; Vöhringer PA; White J; Whooley MA; Winkley K; Yamada M; Zhang Y; Thombs BD; 29717691
LIBRARY
36 Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. Benoit I, Culleton H, Zhou M, DiFalco M, Aguilar-Osorio G, Battaglia E, Bouzid O, Brouwer CPJM, El-Bushari HBO, Coutinho PM, Gruben BS, Hildén KS, Houbraken J, Barboza LAJ, Levasseur A, Majoor E, Mäkelä MR, Narang HM, Trejo-Aguilar B, van den Brink J, vanKuyk PA, Wiebenga A, McKie V, McCleary B, Tsang A, Henrissat B, de Vries RP 26236396
CSFG
37 RNA-Based Therapy Utilizing Oculopharyngeal Muscular Dystrophy Transcript Knockdown and Replacement. Abu-Baker A, Kharma N, Perreault J, Grant A, Shekarabi M, Maios C, Dona M, Neri C, Dion PA, Parker A, Varin L, Rouleau GA 30831428
BIOLOGY
38 Importance of Participant-Centricity and Trust for a Sustainable Medical Information Commons. McGuire AL, Majumder MA, Villanueva AG, Bardill J, Bollinger JM, Boerwinkle E, Bubela T, Deverka PA, Evans BJ, Garrison NA, Glazer D, Goldstein MM, Greely HT, Kahn SD, Knoppers BM, Koenig BA, Lambright JM, Mattison JE, O'Donnell C, Rai AK, Rodriguez LL, Simoncelli T, Terry SF, Thorogood AM, Watson MS, Wilbanks JT, Cook-Deegan R 30994067
ENCS
39 Shortening self-report mental health symptom measures through optimal test assembly methods: Development and validation of the Patient Health Questionnaire-Depression-4 Ishihara M; Harel D; Levis B; Levis AW; Riehm KE; Saadat N; Azar M; Rice DB; Sanchez TA; Chiovitti MJ; Cuijpers P; Gilbody S; Ioannidis JPA; Kloda LA; McMillan D; Patten SB; Shrier I; Arroll B; Bombardier CH; Butterworth P; Carter G; Clover K; Conwell Y; Goodyear-Smith F; Greeno CG; Hambridge J; Harrison PA; Hudson M; Jetté N; Kiely KM; McGuire A; Pence BW; Rooney AG; Sidebottom A; Simning A; Turner A; White J; Whooley MA; Winkley K; Benedetti A; Thombs BD; 30238571
LIBRARY
40 Hypertension Canada's 2016 Canadian Hypertension Education Program Guidelines for Blood Pressure Measurement, Diagnosis, Assessment of Risk, Prevention, and Treatment of Hypertension. Leung AA, Nerenberg K, Daskalopoulou SS, McBrien K, Zarnke KB, Dasgupta K, Cloutier L, Gelfer M, Lamarre-Cliche M, Milot A, Bolli P, Tremblay G, McLean D, Tobe SW, Ruzicka M, Burns KD, Vallée M, Prasad GV, Lebel M, Feldman RD, Selby P, Pipe A, Schiffrin EL, McFarlane PA, Oh P, Hegele RA, Khara M, Wilson TW, Penner SB, Burgess E, Herman RJ, Bacon SL, Rabkin SW, Gilbert RE, Campbell TS, Grover S, Honos G, Lindsay P, Hill MD, Coutts SB, Gubitz G, Campbell NR, Moe GW, Howlett JG, Boulanger JM, Prebtani A, Laroc 27118291
HKAP
41 Expectancy Reduces Symptoms but not Functional Impairment Following Exercise-induced Musculoskeletal Injury. Hedderson WC, Dover GC, George SZ, Crow JA, Borsa PA 28157138
HKAP
42 Hypertension Canada's 2017 Guidelines for Diagnosis, Risk Assessment, Prevention, and Treatment of Hypertension in Adults. Leung AA, Daskalopoulou SS, Dasgupta K, McBrien K, Butalia S, Zarnke KB, Nerenberg K, Harris KC, Nakhla M, Cloutier L, Gelfer M, Lamarre-Cliche M, Milot A, Bolli P, Tremblay G, McLean D, Tran KC, Tobe SW, Ruzicka M, Burns KD, Vallée M, Prasad GVR, Gryn SE, Feldman RD, Selby P, Pipe A, Schiffrin EL, McFarlane PA, Oh P, Hegele RA, Khara M, Wilson TW, Penner SB, Burgess E, Sivapalan P, Herman RJ, Bacon SL, Rabkin SW, Gilbert RE, Campbell TS, Grover S, Honos G, Lindsay P, Hill MD, Coutts SB, Gubitz G, Campbell 28449828
HKAP
43 A NIR-responsive azobenzene-based supramolecular hydrogel using upconverting nanoparticles. Mandl GA, Rojas-Gutierrez PA, Capobianco JA 29726556
CNSR
44 Prolonged Reduction in Shoulder Strength after Transcutaneous Electrical Nerve Stimulation Treatment of Exercise-Induced Acute Muscle Pain. Butera KA, George SZ, Borsa PA, Dover GC 29505689
PERFORM
45 A comparison of muscle activation and knee mechanics during gait between patients with non-traumatic and post-traumatic knee osteoarthritis. Robbins SM, Morelli M, Martineau PA, St-Onge N, Boily M, Dimentberg R, Antoniou J 30898621
PERFORM

 

Title:Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
Authors:Steindorff ASCai FMDing MJiang SAtanasova LBaker SEBarbosa-Filho JRBayram Akcapinar GBrown DWChaverri PChen PChenthamara KDaum CDrula EDubey MBrandström Durling MFlatschacher DEbner TEmri TGao RGeorg RCHenrissat BHermosa RHerrera-Estrella AHinterdobler WKainz PKarlsson MKredics LKubicek CPKuo ALaButti KLipzen ALorito MMach RLManganiello GMarik TMartinez-Reyes NMayrhofer-Reinhartshuber MMiskei MMoisan MCMondo SMonte ENg VPa
Link:https://pubmed.ncbi.nlm.nih.gov/41775999/
DOI:10.1038/s41564-026-02260-3
Publication:Nature microbiology
Keywords:
PMID:41775999 Category: Date Added:2026-03-04
Dept Affiliation: GENOMICS
1 US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
2 State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Shenzhen, China. caif8@mail.sysu.edu.cn.
3 Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Key lab of organic-based fertilizers of China, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, China.
4 Department of Biotechnology and Food Science, BOKU University, Vienna, Austria.
5 Microbial Molecular Phenotyping Group, Environmental Molecular Sciences Division, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
6 Department of Biochemistry and Molecular Biology, Federal University of Goiás, Goiânia, Brazil.
7 Department of Medical Biotechnology, Institute of Health Sciences, Acibadem University, Istanbul, Turkey.
8 USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, USA.
9 Department of Natural Sciences, Bowie State University, Bowie, MD, USA.
10 Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands.
11 Department of Biochemical Technology, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria.
12 Aix Marseille Univ, CNRS, INRAE, AFMB, Marseille, France.
13 Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
14 Department of Microbiology, University of Innsbruck, Innsbruck, Austria.
15 KOLAIDO GmbH, Altenrhein, Switzerland.
16 Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.
17 HUN-REN-UD Fungal Stress Biology Research Group, Debrecen, Hungary.
18 Jiangsu Key Laboratory for Pathogens and Ecosystems, Jiangsu Engineering and Technology Research Centre for Microbiology, College of Life Sciences, Nanjing Normal University, Nanjing, China.
19 Department of Biotechnology and Biomedicine (DTU Bioengineering), Technical University of Denmark, Lyngby, Denmark.
20 Institute for Agribiotechnology Research (CIALE), Department of Microbiology and Genetics, University of Salamanca, Salamanca, Spain.
21 Advanced Genomics Unit, Center for Research and Advanced Studies, Irapuato, Mexico.
22 MyPilz GmbH, Vienna, Austria.
23 Department of Biotechnology and Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
24 Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
25 University of Leon, Ponferrada, Spain.
26 KML Vision GmbH, Graz, Austria.
27 Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada.
28 Wageningen University, Wageningen, Netherlands.
29 Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy.
30 Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.
31 Department of Pharmacy, University of Naples Federico II, Naples, Italy.
32 Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
33 School of Biological Sciences, University of Portsmouth, Portsmouth, UK.
34 ADM, Davis, CA, USA.
35 Plant and Microbial Biology Department, University of California Berkeley, Berkeley, CA, USA.
36 Royal Botanic Gardens, Kew, Richmond, UK. i.druzhinina@kew.org.

Description:

Trichoderma fungi support sustainable agriculture by suppressing plant diseases and improving crop performance. However, emerging pathogenicity of Trichoderma warrants further ecological and genetic characterization. Here we used machine learning to correlate genomic data from 37 Trichoderma strains with over 140 phenotypic traits, spanning metabolic versatility, biotic interactions, stress tolerance and reproductive strategies. We determined Trichoderma to be an ancient, genetically cohesive and physiologically diverse genus with spores capable of germination in water and dispersal via air and water droplets. Metabolic preferences indicate universal adaptation to mycoparasitism and to niches like arboreal microbial mats, alongside broader saprotrophic versatility. Our analyses are consistent with character displacement among close relatives and convergent evolution in distant lineages, with both processes shaping ecological plasticity and traits including dispersal modes, terrestrialization or endophytism. Our findings reveal that while some Trichoderma species show traits of biosafety concern, its vast ecophysiological diversity enables the development of safe, targeted bioeffectors.





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