Keyword search (4,163 papers available)

"Lamoureux G" Authored Publications:

Title Authors PubMed ID
1 Ammonium transporters achieve charge transfer by fragmenting their substrate Wang S; Orabi EA; Baday S; Bernèche S; Lamoureux G; 22631217
CERMM
2 Identification of a cholesterol-binding pocket in inward rectifier K(+) (Kir) channels Fürst O; Nichols CG; Lamoureux G; D' Avanzo N; 25517146
CERMM
3 Salt-Dependent Interactions between the C-Terminal Domain of Osmoregulatory Transporter ProP of Escherichia coli and the Lipid Membrane Ozturk TN; Culham DE; Tempelhagen L; Wood JM; Lamoureux G; 32838524
CERMM
4 Genetic, Structural, and Functional Evidence Link TMEM175 to Synucleinopathies Krohn L; Öztürk TN; Vanderperre B; Ouled Amar Bencheikh B; Ruskey JA; Laurent SB; Spiegelman D; Postuma RB; Arnulf I; Hu MTM; Dauvilliers Y; Högl B; Stefani A; Monaca CC; Plazzi G; Antelmi E; Ferini-Strambi L; Heidbreder A; Rudakou U; Cochen De Cock V; Young P; Wolf P; Oliva P; Zhang XK; Greenbaum L; Liong C; Gagnon JF; Desautels A; Hassin-Baer S; Montplaisir JY; Dupré N; Rouleau GA; Fon EA; Trempe JF; Lamoureux G; Alcalay RN; Gan-Or Z; 31658403
CERMM
5 Drude polarizable force field for cation-π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains Orabi EA; Davis RL; Lamoureux G; 31652004
CERMM
6 Dual Role of the C-Terminal Domain in Osmosensing by Bacterial Osmolyte Transporter ProP Culham DE; Marom D; Boutin R; Garner J; Ozturk TN; Sahtout N; Tempelhagen L; Lamoureux G; Wood JM; 30448037
CHEMBIOCHEM

 

Title:Drude polarizable force field for cation-π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains
Authors:Orabi EADavis RLLamoureux G
Link:https://pubmed.ncbi.nlm.nih.gov/31652004/
DOI:10.1002/jcc.26084
Publication:Journal of computational chemistry
Keywords:Cation-πinteractionsDrude polarizable force fieldab initio calculationsalkali metal ionsbinding free energyquaternary ammonium ions
PMID:31652004 Category:J Comput Chem Date Added:2019-10-28
Dept Affiliation: CERMM
1 Department of Chemistry, Faculty of Science, Assiut University, Assiut, 71516, Egypt.
2 Department of Chemistry, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada.
3 Department of Chemistry and Center for Computational and Integrative Biology (CCIB), Rutgers University, Camden, New Jersey, 08102.
4 Centre for Research in Molecular Modeling (CERMM), Concordia University, Montréal, Québec, H4B 1R6, Canada.

Description:

Cation-p interactions play important roles in molecular recognition and in the stability and function of proteins. However, accurate description of the structure and energetics of cation-p interactions presents a challenge to both additive and polarizable force fields, which are rarely designed to account for the complexation of charged groups with aromatic moieties. We calibrate the Drude polarizable force field for complexes of alkali metal ions (Li+ , Na+ , K+ , Rb+ , Cs+ ), ammonium (NH4+ ), tetramethylammonium (TMA+ ), and tetraethylammonium (TEA+ ) with aromatic amino acid side chain model compounds (benzene, toluene, 4-methylphenol, 3-methylindole) using high-level ab initio quantum chemical properties of these complexes. Molecular dynamics simulations reveal that cation-p complexes of the hard and tightly coordinated Li+ and Na+ ions are not stable in water but that larger ions form stable complexes, with binding free energies ranging between -0.8 and -2.9 kcal/mol. Like in gas phase, all complexes at equilibrium adopt an "en-face" complexation mode in water. The optimized Drude polarizable model provides an accurate description of the cation-p interactions involving small ions and proteins. © 2019 Wiley Periodicals, Inc.





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