Keyword search (4,163 papers available)

"Kharma N" Authored Publications:

Title Authors PubMed ID
1 Robustness and evolvability: Revisited, redefined and applied Kharma N; Bédard-Couture R; 39098381
ENCS
2 BioCloneBot: A versatile, low-cost, and open-source automated liquid handler Wells KC; Kharma N; Jaunky BB; Nie K; Aguiar-Tawil G; Berry D; 38524156
BIOLOGY
3 Digital Microfluidics Chips for the Execution and Real-Time Monitoring of Multiple Ribozymatic Cleavage Reactions Davis AN; Samlali K; Kapadia JB; Perreault J; Shih SCC; Kharma N; 34514224
BIOLOGY
4 Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes. Najeh S, Zandi K, Djerroud S, Kharma N, Perreault J 32712917
ENCS
5 An Adaptive Defect Weighted Sampling Algorithm to Design Pseudoknotted RNA Secondary Structures. Zandi K, Butler G, Kharma N 27499762
CSFG
6 RNA-Based Therapy Utilizing Oculopharyngeal Muscular Dystrophy Transcript Knockdown and Replacement. Abu-Baker A, Kharma N, Perreault J, Grant A, Shekarabi M, Maios C, Dona M, Neri C, Dion PA, Parker A, Varin L, Rouleau GA 30831428
BIOLOGY

 

Title:Digital Microfluidics Chips for the Execution and Real-Time Monitoring of Multiple Ribozymatic Cleavage Reactions
Authors:Davis ANSamlali KKapadia JBPerreault JShih SCCKharma N
Link:pubmed.ncbi.nlm.nih.gov/34514224/
DOI:10.1021/acsomega.1c00239
Publication:ACS omega
Keywords:
PMID:34514224 Category: Date Added:2021-09-13
Dept Affiliation: BIOLOGY
1 Department of Electrical and Computer Engineering, Concordia University, Montreal, Québec H3G 1M8, Canada.
2 Centre for Applied Synthetic Biology, Concordia University, Montréal, Québec H4B 1R6, Canada.
3 Armand-Frappier Health Biotechnology Center, Institut national de la recherche scientifique, Laval, Québec H7V 1B7, Canada.
4 Department of Biology, Concordia University, Montréal, Québec H4B 1R6, Canada.

Description:

In this paper, we describe the design and performance of two digital microfluidics (DMF) chips capable of executing multiple ribozymatic reactions, with proper controls, in response to short single-stranded DNA inducers. Since the fluorescence output of a reaction is measurable directly from the chip, without the need for gel electrophoresis, a complete experiment involving up to eight reactions (per chip) can be carried out reliably, relatively quickly, and efficiently. The ribozymes can also be used as biosensors of the concentration of oligonucleotide inputs, with high sensitivity, low limits of quantification and of detection, and excellent signal-to-noise ratio. The presented chips are readily usable devices that can be used to automate, speed up, and reduce the costs of ribozymatic reaction experiments.




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