Keyword search (4,163 papers available)

"H A" Authored Publications:

Title Authors PubMed ID
1 Management of brain-heart multimorbidity: a clinical practice guideline Edwards JD; Li Z; McFarlane P; Rabi DM; Gilbert J; Bajaj HS; MacIntosh BJ; Bittman J; Feldman RD; Dresser G; Terenzi K; Swartz R; Gabor J; Pearson GJ; Selby P; Wharton S; Warburton DER; Pakhalé S; Styra R; Baker B; Tu K; Hawkins M; Stone JA; Vaillancourt T; Poon S; Virani SA; Jain R; Jones PH; Sandhu RK; Ganesh A; Andrade JG; Stern S; Habert J; Rivard L; Roumeliotis P; Udell JA; Campbell T; Bacon SL; Trudeau L; Keshavjee K; Pham T; Cheng G; Lewis KB; Maar M; Stacey D; Oldenburg B; Dhukai AR; Pasricha SV; Sh 41912243
HKAP
2 Towards user-centered interactive medical image segmentation in VR with an assistive AI agent Spiegler P; Harirpoush A; Xiao Y; 41509996
ENCS
3 Cross-species evaluation of TANGO2 homologs, including HRG-9 and HRG-10 in em Caenorhabditis elegans, /em challenges a proposed role in heme trafficking Sandkuhler SE; Youngs KS; Gottipalli O; Owlett LD; Bandora MB; Naaz A; Kim E; Wang L; Wojtovich A; Gupta V; Sacher M; Mackenzie SJ; 41504601
BIOLOGY
4 A type-3 fuzzy synchronization system subjected to hysteresis quantizer inputs and unknown dynamics: Applicable to financial and physical chaotic systems Tian M; Mohammadzadeh A; Taghavifar H; Sakthivel R; Zhang C; 41381323
ENCS
5 Artificial intelligence-assisted identification of condensing osteitis and idiopathic osteosclerosis on panoramic radiographs Yuksel IB; Boudesh A; Ghanbarzadehchaleshtori M; Ozsoy SC; Bahrilli S; Mohammadi R; Altindag A; 40790082
ENCS
6 Experimental Investigation of the Effect of a MitraClip on Left Ventricular Flow Dynamics Teimouri K; Darwish A; Saleh W; Ng HD; Kadem L; 40325266
ENCS
7 Use of lecanemab and donanemab in the Canadian healthcare system: Evidence, challenges, and areas for future research Smith EE; Phillips NA; Feldman HH; Borrie M; Ganesh A; Henri-Bhargava A; Desmarais P; Frank A; Badhwar A; Barlow L; Bartha R; Best S; Bethell J; Bhangu J; Black SE; Bocti C; Bronskill SE; Burhan AM; Calon F; Camicioli R; Campbell B; Collins DL; Dadar M; DeMarco ML; Ducharme S; Duchesne S; Einstein G; Fisk JD; Gawryluk JR; Grossman L; Ismail Z; Itzhak I; Joshi M; Harrison A; Kroger E; Kumar S; Laforce R; Lanctot KL; Lau M; Lee L; Masellis M; Massoud F; Mitchell SB; Montero-Odasso M; Myers Barnett K; Nygaard HB; Pasternak SH; Peters J; Rajah MN; Robillard JM; Rockwood K; Rosa-Neto P; Seitz DP; Soucy JP; Trenaman SC; Wellington CL; Zadem A; Chertkow H; 39893139
CONCORDIA
8 Is There a Need to Reassess Protein Intake Recommendations Following Metabolic Bariatric Surgery? Ben-Porat T; Lahav Y; Cohen TR; Bacon SL; Buch A; Moizé V; Sherf-Dagan S; 39878797
HKAP
9 Virtual reality-based preoperative planning for optimized trocar placement in thoracic surgery: A preliminary study Harirpoush A; Rakovich G; Kersten-Oertel M; Xiao Y; 39720764
ENCS
10 Recommendations on the use of artificial intelligence in health promotion Smith A; Arena R; Bacon SL; Faghy MA; Grazzi G; Raisi A; Vermeesch AL; Ong' wen M; Popovic D; Pronk NP; 39389332
HKAP
11 The impact of cognitive-motor interference on balance and gait in hearing-impaired older adults: a systematic review Wunderlich A; Wollesen B; Asamoah J; Delbaere K; Li K; 38914940
PSYCHOLOGY
12 Experiencing Loss: A Muslim Widow's Bereavement Narrative Kristiansen M; Younis T; Hassani A; Sheikh A; 25958055
SOCANTH
13 Investigating the relationship between physical, cognitive, and environmental factors of ergonomics with the prevalence of musculoskeletal disorders: A case study in a car-parts manufacturing industry Mokhtarinia H; Alimohammadi B; Sadeghi-Yarandi M; Torabi-Gudarzi S; Soltanzadeh A; Nikbakht N; 38489202
ENCS
14 Morphology Control of Self-Assembled Copper Coordination Polymers for Glucose Assays Van Houten J; Dosajh A; Gulati S; Bhullar G; Copeman C; Ogata AF; 38320270
CHEMBIOCHEM
15 An Anatomically Shaped Mitral Valve for Hemodynamic Testing Darwish A; Papolla C; Rieu R; Kadem L; 38228812
ENCS
16 Nonsingleton Gaussian type-3 fuzzy system with fractional order NTSMC for path tracking of autonomous cars Taghavifar H; Mohammadzadeh A; Zhang W; Zhang C; 38160078
ENCS
17 Evaluation of human vulnerability and toxic effects of chronic and acute occupational exposure to ammonia: A case study in an ice factory Soltanzadeh A; Mahdinia M; Nikbakht N; Hosseinzadeh K; Sadeghi-Yarandi M; 38143407
ENCS
18 Does phasic dopamine release cause policy updates? Carter F; Cossette MP; Trujillo-Pisanty I; Pallikaras V; Breton YA; Conover K; Caplan J; Solis P; Voisard J; Yaksich A; Shizgal P; 38039083
PSYCHOLOGY
19 Accounting for the climate benefit of temporary carbon storage in nature Matthews HD; Zickfeld K; Koch A; Luers A; 37679349
CONCORDIA
20 New metabolic signature for Chagas disease reveals sex steroid perturbation in humans and mice Golizeh M; Nam J; Chatelain E; Jackson Y; Ohlund LB; Rasoolizadeh A; Camargo FV; Mahrouche L; Furtos A; Sleno L; Ndao M; 36590505
CHEMBIOCHEM
21 Lymph Node Metastases Detection Using Gd2O3@PCD as Novel Multifunctional Contrast Imaging Agent in Metabolic Magnetic Resonance Molecular Imaging Rasouli Z; Riyahi-Alam N; Khoobi M; Haghgoo S; Gholibegloo E; Ebrahimpour A; H A; Hashemi H; 36304774
PERFORM
22 Processing visual ambiguity in fractal patterns: Pareidolia as a sign of creativity Pepin AB; Harel Y; O' Byrne J; Mageau G; Dietrich A; Jerbi K; 36164655
PSYCHOLOGY
23 Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations Chen Q; Allot A; Leaman R; Islamaj R; Du J; Fang L; Wang K; Xu S; Zhang Y; Bagherzadeh P; Bergler S; Bhatnagar A; Bhavsar N; Chang YC; Lin SJ; Tang W; Zhang H; Tavchioski I; Pollak S; Tian S; Zhang J; Otmakhova Y; Yepes AJ; Dong H; Wu H; Dufour R; Labrak Y; Chatterjee N; Tandon K; Laleye FAA; Rakotoson L; Chersoni E; Gu J; Friedrich A; Pujari SC; Chizhikova M; Sivadasan N; Vg S; Lu Z; 36043400
ENCS
24 Microfluidic Platforms for the Isolation and Detection of Exosomes: A Brief Review Raju D; Bathini S; Badilescu S; Ghosh A; Packirisamy M; 35630197
ENCS
25 Spectral-Clustering of Lagrangian Trajectory Graphs: Application to Abdominal Aortic Aneurysms Darwish A; Norouzi S; Kadem L; 34845627
ENCS
26 Magnetic particle based liquid biopsy chip for isolation of extracellular vesicles and characterization by gene amplification Bathini S; Pakkiriswami S; Ouellette RJ; Ghosh A; Packirisamy M; 34517262
ENCS
27 Energy loss associated with in-vitro modeling of mitral annular calcification. Wiener PC, Darwish A, Friend E, Kadem L, Pressman GS 33591991
ENCS
28 The need for exercise sciences and an integrated response to COVID-19: A position statement from the international HL-PIVOT network. Faghy MA, Arena R, Stoner L, Haraf RH, Josephson R, Hills AP, Dixit S, Popovic D, Smith A, Myers J, Bacon SL, Niebauer J, Dourado VZ, Babu AS, Maden-Wilkinson TM, Copeland RJ, Gough LA, Bond S, Stuart K, Bewick T, Ashton REM, HL-PIVOT Network 33549590
HKAP
29 Proper Orthogonal Decomposition Analysis of the Flow Downstream of a Dysfunctional Bileaflet Mechanical Aortic Valve. Darwish A, Di Labbio G, Saleh W, Kadem L 33469847
ENCS
30 Impact of Mitral Regurgitation on the Flow in a Model of a Left Ventricle. Papolla C, Darwish A, Kadem L, Rieu R 33000444
ENCS
31 Impact of fluorination on interface energetics and growth of pentacene on Ag(111). Wang Q, Chen MT, Franco-Cañellas A, Shen B, Geiger T, F Bettinger H, Schreiber F, Salzmann I, Gerlach A, Duhm S 32974114
CHEMBIOCHEM
32 GW190521: A Binary Black Hole Merger with a Total Mass of 150  M_{⊙}. Abbott R, Abbott TD, Abraham S, Acernese F, Ackley K, Adams C, Adhikari RX, Adya VB, Affeldt C, Agathos M, Agatsuma K, Aggarwal N, Aguiar OD, Aich A, Aiello L, Ain A, Ajith P, Akcay S, Allen G, Allocca A, Altin PA, Amato A, Anand S, Ananyeva A, Anderson SB, Anderson WG, Angelova SV, Ansoldi S, Antier S, Appert S, Arai K, Araya MC, Areeda JS, Arène M, Arnaud N, Aronson SM, Arun KG, Asali Y, Ascenzi S, Ashton G, Aston SM, Astone P, Aubin F, Aufmuth P, AultONeal K, Austin C, Avendano V, Babak S, Bacon P, Badar 32955328
NA
33 Diagonalization of the finite Hilbert transform on two adjacent intervals: the Riemann-Hilbert approach Bertola M; Blackstone E; Katsevich A; Tovbis A; 32684912
MATHSTATS
34 Improving Safety of MRI in Patients with Deep Brain Stimulation Devices. Boutet A, Chow CT, Narang K, Elias GJB, Neudorfer C, Germann J, Ranjan M, Loh A, Martin AJ, Kucharczyk W, Steele CJ, Hancu I, Rezai AR, Lozano AM 32573388
PSYCHOLOGY
35 Modular Construction of Porous Hydrogen-Bonded  Molecular Materials from Melams. Khadivjam T, Che-Quang H, Maris T, Ajoyan Z, Howarth A, Wuest JD 32115786
CONCORDIA
36 Metabolic networks of the human gut microbiota. Selber-Hnatiw S, Sultana T, Tse W, Abdollahi N, Abdullah S, Al Rahbani J, Alazar D, Alrumhein NJ, Aprikian S, Arshad R, Azuelos JD, Bernadotte D, Beswick N, Chazbey H, Church K, Ciubotaru E, D'Amato L, Del Corpo T, Deng J, Di Giulio BL, Diveeva D, Elahie E, Frank JGM, Furze E, Garner R, Gibbs V, Goldberg-Hall R, Goldman CJ, Goltsios FF, Gorjipour K, Grant T, Greco B, Guliyev N, Habrich A, Hyland H, Ibrahim N, Iozzo T, Jawaheer-Fenaoui A, Jaworski JJ, Jhajj MK, Jones J, Joyette R, Kaudeer S, Kelley S, Ki 31799915
BIOLOGY
37 Singlet exciton fission via an intermolecular charge transfer state in coevaporated pentacene-perfluoropentacene thin films Kim VO; Broch K; Belova V; Chen YS; Gerlach A; Schreiber F; Tamura H; Della Valle RG; D' Avino G; Salzmann I; Beljonne D; Rao A; Friend R; 31675857
CERMM
38 Nano-Bio Interactions of Extracellular Vesicles with Gold Nanoislands for Early Cancer Diagnosis. Bathini S, Raju D, Badilescu S, Kumar A, Ouellette RJ, Ghosh A, Packirisamy M 31549028
ENCS
39 Dielectrophoresis Multipath Focusing of Microparticles through Perforated Electrodes in Microfluidic Channels. Alazzam A, Al-Khaleel M, Riahi MK, Mathew B, Gawanmeh A, Nerguizian V 31394810
ENCS
40 The priming effect of food persists following blockade of dopamine receptors. Evangelista C, Hantson A, Shams WM, Almey A, Pileggi M, Voisard JR, Boulos V, Al-Qadri Y, Gonzalez Cautela BV, Zhou FX, Duchemin J, Habrich A, Tito N, Koumrouyan RA, Patel S, Lorenc V, Gagne C, El Oufi K, Shizgal P, Brake WG 31350860
CSBN
41 Lithocholic bile acid accumulated in yeast mitochondria orchestrates a development of an anti-aging cellular pattern by causing age-related changes in cellular proteome. Beach A, Richard VR, Bourque S, Boukh-Viner T, Kyryakov P, Gomez-Perez A, Arlia-Ciommo A, Feldman R, Leonov A, Piano A, Svistkova V, Titorenko VI 25839782
MASSSPEC
42 Caloric restriction delays yeast chronological aging by remodeling carbohydrate and lipid metabolism, altering peroxisomal and mitochondrial functionalities, and postponing the onsets of apoptotic and liponecrotic modes of regulated cell death. Arlia-Ciommo A, Leonov A, Beach A, Richard VR, Bourque SD, Burstein MT, Kyryakov P, Gomez-Perez A, Koupaki O, Feldman R, Titorenko VI 29662634
BIOLOGY
43 Genetic combining ability of coriander genotypes for agronomic and phytochemical traits in response to contrasting irrigation regimes. Gholizadeh A, Dehghani H, Khodadadi M, Gulick PJ 29953470
BIOLOGY
44 Mechanisms through which lithocholic acid delays yeast chronological aging under caloric restriction conditions. Arlia-Ciommo A, Leonov A, Mohammad K, Beach A, Richard VR, Bourque SD, Burstein MT, Goldberg AA, Kyryakov P, Gomez-Perez A, Koupaki O, Titorenko VI 30405886
BIOLOGY
45 Geo-referenced population-specific microsatellite data across American continents, the MacroPopGen Database. Lawrence ER, Benavente JN, Matte JM, Marin K, Wells ZRR, Bernos TA, Krasteva N, Habrich A, Nessel GA, Koumrouyan RA, Fraser DJ 30944329
BIOLOGY
46 Experimental investigation of the flow downstream of a dysfunctional bileaflet mechanical aortic valve. Darwish A, Di Labbio G, Saleh W, Smadi O, Kadem L 31066923
ENCS
47 Hypertension Canada's 2018 Guidelines for Diagnosis, Risk Assessment, Prevention, and Treatment of Hypertension in Adults and Children. Nerenberg KA, Zarnke KB, Leung AA, Dasgupta K, Butalia S, McBrien K, Harris KC, Nakhla M, Cloutier L, Gelfer M, Lamarre-Cliche M, Milot A, Bolli P, Tremblay G, McLean D, Padwal RS, Tran KC, Grover S, Rabkin SW, Moe GW, Howlett JG, Lindsay P, Hill MD, Sharma M, Field T, Wein TH, Shoamanesh A, Dresser GK, Hamet P, Herman RJ, Burgess E, Gryn SE, Grégoire JC, Lewanczuk R, Poirier L, Campbell TS, Feldman RD, Lavoie KL, Tsuyuki RT, Honos G, Prebtani APH, Kline G, Schiffrin EL, Don-Wauchope A, Tobe SW, Gilbert RE, 29731013
NA
48 Synthesis of Highly Functionalized Triarylbismuthines by Functional Group Manipulation and Use in Palladium- and Copper-Catalyzed Arylation Reactions. Hébert M, Petiot P, Benoit E, Dansereau J, Ahmad T, Le Roch A, Ottenwaelder X, Gagnon A 27231755
CHEMBIOCHEM
49 Pyrrole and Fused Pyrrole Compounds with Bioactivity against Inflammatory Mediators. Said Fatahala S, Hasabelnaby S, Goudah A, Mahmoud GI, Helmy Abd-El Hameed R 28304349
CHEMBIOCHEM
50 Are Magnetic Resonance Imaging Technologies Crucial to Our Understanding of Spinal Conditions? Crawford RJ, Fortin M, Weber KA, Smith A, Elliott JM 30913967
PERFORM

 

Title:Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Authors:Chen QAllot ALeaman RIslamaj RDu JFang LWang KXu SZhang YBagherzadeh PBergler SBhatnagar ABhavsar NChang YCLin SJTang WZhang HTavchioski IPollak STian SZhang JOtmakhova YYepes AJDong HWu HDufour RLabrak YChatterjee NTandon KLaleye FAARakotoson LChersoni EGu JFriedrich APujari SCChizhikova MSivadasan NVg SLu Z
Link:https://pubmed.ncbi.nlm.nih.gov/36043400/
DOI:10.1093/database/baac069
Publication:Database : the journal of biological databases and curation
Keywords:
PMID:36043400 Category: Date Added:2022-08-31
Dept Affiliation: ENCS
1 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, MD, Bethesda 20892, USA.
2 School of Biomedical Informatics, UT Health, TX, Houston 77030, USA.
3 Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
4 Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
5 College of Economics and Management, Beijing University of Technology, Beijing, QC, China.
6 CLaC Labs, Concordia University, Montreal, Canada.
7 Navrachana University, Vadodara, India.
8 Graduate Institute of Data Science, Taipei Medical University, Taipei, Taiwan.
9 College of Computer Science and Technology, Dalian University of Technology, Dalian, China.
10 Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia.
11 Jožef Stefan Institute, Ljubljana, Slovenia.
12 Department of Statistics, Florida State University, Tallahassee, FL, USA.
13 School of Computing and Information Systems, University of Melbourne, Melbourne, AU-VIC, Australia.
14 School of Computing Technologies, RMIT University, Melbourne, AU-VIC, Australia.
15 Centre for Medical Informatics, Usher Institute, University of Edinburgh, Edinburgh, UK.
16 Institute of Health Informatics, University College London, London, UK.
17 LS2N, Nantes University, Nantes, France.
18 LIA, Avignon University, Avignon, France.
19 Department of Mathematics, Indian Institute of Technology Delhi, New Delhi, India.
20 Opscidia, Paris, France.
21 Department of Chinese and Bilingual Studies, The Hong Kong Polytechnic University, Hong Kong, China.
22 Bosch Center for Artificial Intelligence, Renningen, Germany.
23 Institute of Computer Science, Heidelberg University, Heidelberg, Germany.
24 SINAI Group, Department of Computer Science, Advanced Studies Center in ICT (CEATIC), Universidad de Jaén, Jaén, Spain.
25 TCS Research, Life Sciences, Hyderabad, India.

Description:

The coronavirus disease 2019 (COVID-19) pandemic has been severely impacting global society since December 2019. The related findings such as vaccine and drug development have been reported in biomedical literature-at a rate of about 10 000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200 000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g. Diagnosis and Treatment) to the articles in LitCovid. The annotated topics have been widely used for navigating the COVID literature, rapidly locating articles of interest and other downstream studies. However, annotating the topics has been the bottleneck of manual curation. Despite the continuing advances in biomedical text-mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset-consisting of over 30 000 articles with manually reviewed topics-was created for training and testing. It is one of the largest multi-label classification datasets in biomedical scientific literature. Nineteen teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181 and 0.9394 for macro-F1-score, micro-F1-score and instance-based F1-score, respectively. Notably, these scores are substantially higher (e.g. 12%, higher for macro F1-score) than the corresponding scores of the state-of-art multi-label classification method. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development. Database URL https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/.





BookR developed by Sriram Narayanan
for the Concordia University School of Health
Copyright © 2011-2026
Cookie settings
Concordia University