Keyword search (4,164 papers available)

"Glatard T" Authored Publications:

Title Authors PubMed ID
1 Hierarchical Storage Management in User Space for Neuroimaging Applications Hayot-Sasson V; Glatard T; 41432812
ENCS
2 Open-source platforms to investigate analytical flexibility in neuroimaging Sanz-Robinson J; Wang M; McPherson B; Chatelain Y; Kennedy D; Glatard T; Poline JB; 40800896
ENCS
3 An analysis of performance bottlenecks in MRI preprocessing Dugré M; Chatelain Y; Glatard T; 40072903
ENCS
4 Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study Germani E; Bhagwat N; Dugré M; Gau R; Montillo AA; Nguyen KP; Sokolowski A; Sharp M; Poline JB; Glatard T; 39982930
ENCS
5 Registered report: Age-preserved semantic memory and the CRUNCH effect manifested as differential semantic control networks: An fMRI study Haitas N; Dubuc J; Massé-Leblanc C; Chamberland V; Amiri M; Glatard T; Wilson M; Joanette Y; Steffener J; 38917084
ENCS
6 Longitudinal brain structure changes in Parkinson's disease: A replication study Sokolowski A; Bhagwat N; Chatelain Y; Dugré M; Hanganu A; Monchi O; McPherson B; Wang M; Poline JB; Sharp M; Glatard T; 38295031
ENCS
7 Numerical stability of DeepGOPlus inference Gonzalez Pepe I; Chatelain Y; Kiar G; Glatard T; 38285635
ENCS
8 Data and Tools Integration in the Canadian Open Neuroscience Platform Poline JB; Das S; Glatard T; Madjar C; Dickie EW; Lecours X; Beaudry T; Beck N; Behan B; Brown ST; Bujold D; Beauvais M; Caron B; Czech C; Dharsee M; Dugré M; Evans K; Gee T; Ippoliti G; Kiar G; Knoppers BM; Kuehn T; Le D; Lo D; Mazaheri M; MacFarlane D; Muja N; O' Brien EA; O' Callaghan L; Paiva S; Park P; Quesnel D; Rabelais H; Rioux P; Legault M; Tremblay-Mercier J; Rotenberg D; Stone J; Strauss T; Zaytseva K; Zhou J; Duchesne S; Khan AR; Hill S; Evans AC; 37024500
ENCS
9 Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks Kiar G; Chatelain Y; de Oliveira Castro P; Petit E; Rokem A; Varoquaux G; Misic B; Evans AC; Glatard T; 34724000
ENCS
10 Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset Commowick O; Kain M; Casey R; Ameli R; Ferré JC; Kerbrat A; Tourdias T; Cervenansky F; Camarasu-Pop S; Glatard T; Vukusic S; Edan G; Barillot C; Dojat M; Cotton FI; 34563682
ENCS
11 The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging Paquola C; Royer J; Lewis LB; Lepage C; Glatard T; Wagstyl K; DeKraker J; Toussaint PJ; Valk SL; Collins DL; Khan A; Amunts K; Evans AC; Dickscheid T; Bernhardt BC; 34431476
IMAGING
12 An analysis of security vulnerabilities in container images for scientific data analysis Kaur B; Dugré M; Hanna A; Glatard T; 34080631
ENCS
13 File-based localization of numerical perturbations in data analysis pipelines. Salari A, Kiar G, Lewis L, Evans AC, Glatard T 33269388
ENCS
14 A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects. Khannouz M; Glatard T; 33202905
ENCS
15 Comparing perturbation models for evaluating stability of neuroimaging pipelines. Kiar G, de Oliveira Castro P, Rioux P, Petit E, Brown ST, Evans AC, Glatard T 32831546
IMAGING
16 A Quantitative Comparison of Overlapping and Non-Overlapping Sliding Windows for Human Activity Recognition Using Inertial Sensors. Dehghani A, Sarbishei O, Glatard T, Shihab E 31752158
ENCS
17 Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC 28111547
IMAGING
18 Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT 28230846
IMAGING
19 The first MICCAI challenge on PET tumor segmentation. Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D 29268169
IMAGING
20 Boutiques: a flexible framework to integrate command-line applications in computing platforms. Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC 29718199
ENCS
21 Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C 30209345
ENCS
22 A Serverless Tool for Platform Agnostic Computational Experiment Management. Kiar G, Brown ST, Glatard T, Evans AC 30890927
ENCS

 

Title:A Serverless Tool for Platform Agnostic Computational Experiment Management.
Authors:Kiar GBrown STGlatard TEvans AC
Link:https://www.ncbi.nlm.nih.gov/pubmed/30890927?dopt=Abstract
Publication:
Keywords:
PMID:30890927 Category:Front Neuroinform Date Added:2019-06-04
Dept Affiliation: ENCS
1 Montreal Neurological Institute, McGill University, Montreal, QC, Canada.
2 Department of Biomedical Engineering, McGill University, Montreal, QC, Canada.
3 Department of Computer Science, Concordia University, Montreal, QC, Canada.
4 Department of Neurology and Neurosurgery, McGill University, Montreal, QC, Canada.

Description:

A Serverless Tool for Platform Agnostic Computational Experiment Management.

Front Neuroinform. 2019;13:12

Authors: Kiar G, Brown ST, Glatard T, Evans AC

Abstract

Neuroscience has been carried into the domain of big data and high performance computing (HPC) on the backs of initiatives in data collection and an increasingly compute-intensive tools. While managing HPC experiments requires considerable technical acumen, platforms, and standards have been developed to ease this burden on scientists. While web-portals make resources widely accessible, data organizations such as the Brain Imaging Data Structure and tool description languages such as Boutiques provide researchers with a foothold to tackle these problems using their own datasets, pipelines, and environments. While these standards lower the barrier to adoption of HPC and cloud systems for neuroscience applications, they still require the consolidation of disparate domain-specific knowledge. We present Clowdr, a lightweight tool to launch experiments on HPC systems and clouds, record rich execution records, and enable the accessible sharing and re-launch of experimental summaries and results. Clowdr uniquely sits between web platforms and bare-metal applications for experiment management by preserving the flexibility of do-it-yourself solutions while providing a low barrier for developing, deploying and disseminating neuroscientific analysis.

PMID: 30890927 [PubMed]





BookR developed by Sriram Narayanan
for the Concordia University School of Health
Copyright © 2011-2026
Cookie settings
Concordia University