PERFORM Publications

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Title		Authors	PubMed ID
1	Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset	Commowick O; Kain M; Casey R; Ameli R; Ferré JC; Kerbrat A; Tourdias T; Cervenansky F; Camarasu-Pop S; Glatard T; Vukusic S; Edan G; Barillot C; Dojat M; Cotton FI;	34563682 ENCS
2	The first MICCAI challenge on PET tumor segmentation.	Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D	29268169 IMAGING
3	Boutiques: a flexible framework to integrate command-line applications in computing platforms.	Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC	29718199 ENCS
4	Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.	Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C	30209345 ENCS

Title:	The first MICCAI challenge on PET tumor segmentation.
Authors:	Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D
Link:	https://www.ncbi.nlm.nih.gov/pubmed/29268169?dopt=Abstract
DOI:	10.1016/j.media.2017.12.007
Publication:	Medical image analysis
Keywords:	Comparative study; Image segmentation; MICCAI challenge; PET functional volumes;
PMID:	29268169	Category:	Med Image Anal	Date Added:	2019-06-20
Dept Affiliation:	IMAGING 1 LaTIM, UMR 1101, INSERM, IBSAM, UBO, UBL, Brest, France. Electronic address: hatt@univ-brest.fr. 2 LaTIM, UMR 1101, INSERM, IBSAM, UBO, UBL, Brest, France. 3 Key Laboratory of Image Processing and Intelligent Control of Ministry of Education of China, School of Automation, Huazhong University of Science and Technology, Wuhan 430074, China. 4 Memorial Sloan-Kettering Cancer Center, New-York, USA. 5 INSERM, UMR 930, Imaging and brain, University of Tours, France. 6 Stermedia Sp. z o. o., ul. A. Ostrowskiego 13, Wroclaw, Poland. 7 Stermedia Sp. z o. o., ul. A. Ostrowskiego 13, Wroclaw, Poland; Wroclaw University of Science and Technology, Faculty of Fundamental Problems of Technology, Department of Biomedical Engineering, Poland. 8 Université de Lyon, CREATIS, CNRS UMR5220, INSERM UMR 1044, INSA-Lyon, Université Lyon 1, Lyon, France. 9 Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada. 10 INRIA, Visages project-team, CNRS, IRISA 6074, INSERM, Visages, UMR 1228, University of Rennes I, Rennes Cx 35042, France.

Description:

The first MICCAI challenge on PET tumor segmentation.

Med Image Anal. 2018 02;44:177-195

Authors: Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D

Abstract

INTRODUCTION: Automatic functional volume segmentation in PET images is a challenge that has been addressed using a large array of methods. A major limitation for the field has been the lack of a benchmark dataset that would allow direct comparison of the results in the various publications. In the present work, we describe a comparison of recent methods on a large dataset following recommendations by the American Association of Physicists in Medicine (AAPM) task group (TG) 211, which was carried out within a MICCAI (Medical Image Computing and Computer Assisted Intervention) challenge.

MATERIALS AND METHODS: Organization and funding was provided by France Life Imaging (FLI). A dataset of 176 images combining simulated, phantom and clinical images was assembled. A website allowed the participants to register and download training data (n?=?19). Challengers then submitted encapsulated pipelines on an online platform that autonomously ran the algorithms on the testing data (n?=?157) and evaluated the results. The methods were ranked according to the arithmetic mean of sensitivity and positive predictive value.

RESULTS: Sixteen teams registered but only four provided manuscripts and pipeline(s) for a total of 10 methods. In addition, results using two thresholds and the Fuzzy Locally Adaptive Bayesian (FLAB) were generated. All competing methods except one performed with median accuracy above 0.8. The method with the highest score was the convolutional neural network-based segmentation, which significantly outperformed 9 out of 12 of the other methods, but not the improved K-Means, Gaussian Model Mixture and Fuzzy C-Means methods.

CONCLUSION: The most rigorous comparative study of PET segmentation algorithms to date was carried out using a dataset that is the largest used in such studies so far. The hierarchy amongst the methods in terms of accuracy did not depend strongly on the subset of datasets or the metrics (or combination of metrics). All the methods submitted by the challengers except one demonstrated good performance with median accuracy scores above 0.8.

PMID: 29268169 [PubMed - indexed for MEDLINE]

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