Keyword search (4,163 papers available)

"Améli R" Authored Publications:

Title Authors PubMed ID
1 Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset Commowick O; Kain M; Casey R; Ameli R; Ferré JC; Kerbrat A; Tourdias T; Cervenansky F; Camarasu-Pop S; Glatard T; Vukusic S; Edan G; Barillot C; Dojat M; Cotton FI; 34563682
ENCS
2 Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C 30209345
ENCS

 

Title:Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset
Authors:Commowick OKain MCasey RAmeli RFerré JCKerbrat ATourdias TCervenansky FCamarasu-Pop SGlatard TVukusic SEdan GBarillot CDojat MCotton FI
Link:https://pubmed.ncbi.nlm.nih.gov/34563682/
DOI:10.1016/j.neuroimage.2021.118589
Publication:NeuroImage
Keywords:
PMID:34563682 Category: Date Added:2021-09-27
Dept Affiliation: ENCS
1 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France. Electronic address: https://olivier.commowick.org.
2 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France.
3 Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.
4 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France; CHU Rennes, Department of Neuroradiology, F-35033, Rennes, France.
5 CHU Rennes, Department of Neurology, Rennes, F-35033, France.
6 CHU de Bordeaux, Service de Neuro-Imagerie, Bordeaux, France.
7 Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, Lyon, U1206, F-69621, France.
8 Department of Computer Science and Software Engineering, Concordia university, Montreal, Canada.

Description:

MRI plays a crucial role in multiple sclerosis diagnostic and patient follow-up. In particular, the delineation of T2-FLAIR hyperintense lesions is crucial although mostly performed manually - a tedious task. Many methods have thus been proposed to automate this task. However, sufficiently large datasets with a thorough expert manual segmentation are still lacking to evaluate these methods. We present a unique dataset for MS lesions segmentation evaluation. It consists of 53 patients acquired on 4 different scanners with a harmonized protocol. Hyperintense lesions on FLAIR were manually delineated on each patient by 7 experts with control on T2 sequence, and gathered in a consensus segmentation for evaluation. We provide raw and preprocessed data and a split of the dataset into training and testing data, the latter including data from a scanner not present in the training dataset. We strongly believe that this dataset will become a reference in MS lesions segmentation evaluation, allowing to evaluate many aspects: evaluation of performance on unseen scanner, comparison to individual experts performance, comparison to other challengers who already used this dataset, etc.





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