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Metrics for evaluation of automatic epileptogenic zone localization in intracranial electrophysiology

Author(s): Hrtonova V; Nejedly P; Travnicek V; Cimbalnik J; Matouskova B; Pail M; Peter-Derex L; Grova C; Gotman J; Halamek J; Jurak P; Brazdil M; Klimes P; Frauscher B;

Introduction: Precise localization of the epileptogenic zone is critical for successful epilepsy surgery. However, imbalanced datasets in terms of epileptic vs. normal electrode contacts and a lack of standardized evaluation guidelines hinder the consistent evaluation of automatic machine learnin ...

Article GUID: 39608298


CosSIF: Cosine similarity-based image filtering to overcome low inter-class variation in synthetic medical image datasets

Author(s): Islam M; Zunair H; Mohammed N;

Crafting effective deep learning models for medical image analysis is a complex task, particularly in cases where the medical image dataset lacks significant inter-class variation. This challenge is further aggravated when employing such datasets to generate synthetic images using generative adversarial networks (GANs), as the output of GANs heavily relie ...

Article GUID: 38492455


Fractals in Neuroimaging

Author(s): Lahmiri S; Boukadoum M; Di Ieva A;

Several natural phenomena can be described by studying their statistical scaling patterns, hence leading to simple geometrical interpretation. In this regard, fractal geometry is a powerful tool to describe the irregular or fragmented shape of natural features, using spatial or time-domain statistical scaling laws (power-law behavior) to characterize real ...

Article GUID: 38468046


Bayesian workflow for the investigation of hierarchical classification models from tau-PET and structural MRI data across the Alzheimer's disease spectrum

Author(s): Belasso CJ; Cai Z; Bezgin G; Pascoal T; Stevenson J; Rahmouni N; Tissot C; Lussier F; Rosa-Neto P; Soucy JP; Rivaz H; Benali H;

Background: Alzheimer's disease (AD) diagnosis in its early stages remains difficult with current diagnostic approaches. Though tau neurofibrillary tangles (NFTs) generally follow the stereotypical pattern described by the Braak staging scheme, the network degeneration hypothesis (NDH) has su ...

Article GUID: 37920382


Class imbalance should not throw you off balance: Choosing the right classifiers and performance metrics for brain decoding with imbalanced data

Author(s): Thölke P; Mantilla-Ramos YJ; Abdelhedi H; Maschke C; Dehgan A; Harel Y; Kemtur A; Mekki Berrada L; Sahraoui M; Young T; Bellemare Pépin A; El Khantour C; Landry M; Pascarella A; Hadid V; Combrisson E; O' Byrne J; Jerbi K;

Machine learning (ML) is increasingly used in cognitive, computational and clinical neuroscience. The reliable and efficient application of ML requires a sound understanding of its subtleties and limitations. Training ML models on datasets with imbalanced classes is a particularly common problem, ...

Article GUID: 37385392


Compatible-domain Transfer Learning for Breast Cancer Classification with Limited Annotated Data

Author(s): Shamshiri MA; Krzyzak A; Kowal M; Korbicz J;

Microscopic analysis of breast cancer images is the primary task in diagnosing cancer malignancy. Recent attempts to automate this task have employed deep learning models whose success has depended on large volumes of data, while acquiring annotated data in biomedical domains is time-consuming and may not always be feasible. A typical strategy to address ...

Article GUID: 36758326


Cross-collection latent Beta-Liouville allocation model training with privacy protection and applications

Author(s): Luo Z; Amayri M; Fan W; Bouguila N;

Cross-collection topic models extend previous single-collection topic models, such as Latent Dirichlet Allocation (LDA), to multiple collections. The purpose of cross-collection topic modeling is to model document-topic representations and reveal similarities between each topic and differences among groups. However, the restriction of Dirichlet prior and ...

Article GUID: 36685642


Quantifying imbalanced classification methods for leukemia detection

Author(s): Depto DS; Rizvee MM; Rahman A; Zunair H; Rahman MS; Mahdy MRC;

Uncontrolled proliferation of B-lymphoblast cells is a common characterization of Acute Lymphoblastic Leukemia (ALL). B-lymphoblasts are found in large numbers in peripheral blood in malignant cases. Early detection of the cell in bone marrow is essential as the disease progresses rapidly if left untreated. However, automated classification of the cell is ...

Article GUID: 36516574


Extending Effective Dynamic Range of Hyperspectral Line Cameras for Short Wave Infrared Imaging

Author(s): Shaikh MS; Jaferzadeh K; Thörnberg B;

In this work, a multi-exposure method is proposed to increase the dynamic range (DR) of hyperspectral imaging using an InGaAs-based short-wave infrared (SWIR) hyperspectral line camera. Spectral signatures of materials were captured for scenarios in which the DR of a scene was greater than the DR of a line camera. To demonstrate the problem and test the p ...

Article GUID: 35270968


Voice characteristics from isolated rapid eye movement sleep behavior disorder to early Parkinson's disease

Author(s): Laetitia Jeancolas

CONCLUSION: This study provides new insight in the characterization of sex-dependent early PD speech impairments, and demonstrates the valuable benefit of including automated voice analysis in future diagnostic procedures of prodromal PD.

Article GUID: 35063866


Bayesian Learning of Shifted-Scaled Dirichlet Mixture Models and Its Application to Early COVID-19 Detection in Chest X-ray Images

Author(s): Bourouis S; Alharbi A; Bouguila N;

Early diagnosis and assessment of fatal diseases and acute infections on chest X-ray (CXR) imaging may have important therapeutic implications and reduce mortality. In fact, many respiratory diseases have a serious impact on the health and lives of people. However, certain types of infections may include high variations in terms of contrast, size and shap ...

Article GUID: 34460578


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