| Title |
Authors |
PubMed ID |
| 1 |
Ion channel classification through machine learning and protein language model embeddings |
Ghazikhani H; Butler G; |
39572876
ENCS |
| 2 |
SPOT: A machine learning model that predicts specific substrates for transport proteins |
Kroll A; Niebuhr N; Butler G; Lercher MJ; |
39325691
ENCS |
| 3 |
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses |
Steindorff AS; Aguilar-Pontes MV; Robinson AJ; Andreopoulos B; LaButti K; Kuo A; Mondo S; Riley R; Otillar R; Haridas S; Lipzen A; Grimwood J; Schmutz J; Clum A; Reid ID; Moisan MC; Butler G; Nguyen TTM; Dewar K; Conant G; Drula E; Henrissat B; Hansel C; Singer S; Hutchinson MI; de Vries RP; Natvig DO; Powell AJ; Tsang A; Grigoriev IV; |
39266695
CSFG |
| 4 |
Exploiting protein language models for the precise classification of ion channels and ion transporters |
Ghazikhani H; Butler G; |
38656743
CSFG |
| 5 |
Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks |
Ghazikhani H; Butler G; |
37497772
ENCS |
| 6 |
Integrative approach for detecting membrane proteins. |
Alballa M, Butler G |
33349234
CSFG |
| 7 |
BENIN: Biologically enhanced network inference. |
Wonkap SK, Butler G |
32698722
ENCS |
| 8 |
TooT-T: discrimination of transport proteins from non-transport proteins. |
Alballa M, Butler G |
32321420
CSFG |
| 9 |
TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information. |
Alballa M, Aplop F, Butler G |
31935244
CSFG |
| 10 |
Analytical and computational approaches to define the Aspergillus niger secretome. |
Tsang A, Butler G, Powlowski J, Panisko EA, Baker SE |
19618504
BIOLOGY |
| 11 |
SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. |
Reid I, O'Toole N, Zabaneh O, Nourzadeh R, Dahdouli M, Abdellateef M, Gordon PM, Soh J, Butler G, Sensen CW, Tsang A |
24980894
CSFG |
| 12 |
Machine learning for biomedical literature triage. |
Almeida H, Meurs MJ, Kosseim L, Butler G, Tsang A |
25551575
CSFG |
| 13 |
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support. |
Strasser K, McDonnell E, Nyaga C, Wu M, Wu S, Almeida H, Meurs MJ, Kosseim L, Powlowski J, Butler G, Tsang A |
25754864
CSFG |
| 14 |
An Adaptive Defect Weighted Sampling Algorithm to Design Pseudoknotted RNA Secondary Structures. |
Zandi K, Butler G, Kharma N |
27499762
CSFG |
